NEMVEDRAFT_v1g214570 (Nematostella vectensis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 NEMVEDRAFT_v1g214570 T340839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx1
M00832_2.00 		Mus musculus
NRGTGTGAANN
NNTTCACACYN		 PBM
Weirauch et al.(2013)
pTH3822 		0.737 0.781
TBX1
M03570_2.00 		Homo sapiens
ARGTGTKAAAWHARGTGTGA
TCACACYTDWTTTMACACYT		 SELEX
Jolma et al.(2013)
TBX1_1 		0.737 0.781
TBX1
M03571_2.00 		Homo sapiens
AGGTGTGAWWTTCACACCT
AGGTGTGAAWWTCACACCT		 SELEX
Jolma et al.(2013)
TBX1_2 		0.737 0.781
TBX1
M03572_2.00 		Homo sapiens
AGGTGTGA
TCACACCT		 SELEX
Jolma et al.(2013)
TBX1_3 		0.737 0.781
TBX1
M03573_2.00 		Homo sapiens
YYTCACACMTYWRAGGTGTGAAA
TTTCACACCTYWRAKGTGTGARR		 SELEX
Jolma et al.(2013)
TBX1_4 		0.737 0.781
TBX1
M03574_2.00 		Homo sapiens
YTCACACCTDKAGGTGTGAA
TTCACACCTMHAGGTGTGAR		 SELEX
Jolma et al.(2013)
TBX1_5 		0.737 0.781
TBX1
M05821_2.00 		Homo sapiens
BDRGGTGTGARV
BYTCACACCYHV		 SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX 		0.737 0.781
Tbx1
M11386_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX1_07 		0.737 0.781
TBX1
M05822_2.00 		Homo sapiens
DNWGGTGTGARN
NYTCACACCWNH		 SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX 		0.737 0.781
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO35086 T-box 1 186

Links

Other T-box family TFs
Other Nematostella vectensis TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_09162 Aegilops tauschii F775_09162 N
F775_16499 Aegilops tauschii F775_16499 N
F775_18370 Aegilops tauschii F775_18370 N
F775_18558 Aegilops tauschii F775_18558 N
Traes_1AL_3C796C3D3 Triticum aestivum Traes_1AL_3C796C3D3 N
Traes_1BL_37FA9C770 Triticum aestivum Traes_1BL_37FA9C770 N
Traes_3DS_31B0043F6 Triticum aestivum Traes_3DS_31B0043F6 N
Traes_6AS_073DEE100 Triticum aestivum Traes_6AS_073DEE100 N
Traes_6BS_1AE1C47BC Triticum aestivum Traes_6BS_1AE1C47BC N
Traes_6BS_7F1846171 Triticum aestivum Traes_6BS_7F1846171 N
Traes_6BS_945FD8DAC1 Triticum aestivum Traes_6BS_945FD8DAC1 N
Traes_6BS_A3531CD43 Triticum aestivum Traes_6BS_A3531CD43 N
Traes_6BS_FA68506CF Triticum aestivum Traes_6BS_FA68506CF N
Traes_6DS_1CC9DD1EC Triticum aestivum Traes_6DS_1CC9DD1EC N
Traes_6DS_2185308F3 Triticum aestivum Traes_6DS_2185308F3 N
Traes_6DS_9E1F83202 Triticum aestivum Traes_6DS_9E1F83202 N
Traes_6DS_E67EB0CBE Triticum aestivum Traes_6DS_E67EB0CBE N
Traes_7BS_E70858C081 Triticum aestivum Traes_7BS_E70858C081 N
Traes_7DS_6B1F6F5E5 Triticum aestivum Traes_7DS_6B1F6F5E5 N
TRIUR3_06575 Triticum urartu TRIUR3_06575 N