CBN01059 (Caenorhabditis brenneri)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 CBN01059 T342189_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.832 0.832
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.832 0.832
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.832 0.832
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.832 0.832
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.832 0.832
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.832 0.832
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.832 0.832
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.832 0.832
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.832 0.832
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.832 0.832
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.737 0.737
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.737 0.737
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN01059 TBP 162 244
CBN01059 TBP 252 335

Links

Other TBP family TFs
Other Caenorhabditis brenneri TFs

746 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010550 Calypte anna Aan_R010550 I
Afo_R015982 Aptenodytes forsteri Afo_R015982 I
Cmyd_10021233 Chelonia mydas Cmyd_10021233 I
MSANTD3 Anolis carolinensis ENSACAG00000025458 I
ENSAMEG00000014972 Ailuropoda melanoleuca ENSAMEG00000014972 I
ENSAPLG00000013833 Anas platyrhynchos ENSAPLG00000013833 I
MSANTD3 Bos taurus ENSBTAG00000037580 I
ENSBTAP00000042141-D1 Bos grunniens ENSBTAP00000042141-D1 I
MSANTD3-TMEFF1 Canis familiaris ENSCAFG00000002577 I
MSANTD3-TMEFF1 Callithrix jacchus ENSCJAG00000011484 I
ENSCSAG00000011159 Chlorocebus sabaeus ENSCSAG00000011159 I
MSANTD3 Dasypus novemcinctus ENSDNOG00000035872 I
MSANTD3 Equus caballus ENSECAG00000021233 I
ENSFALG00000004875 Ficedula albicollis ENSFALG00000004875 I
MSANTD3-TMEFF1 Felis catus ENSFCAG00000030912 I
MSANTD3 Homo sapiens ENSG00000066697 D
MSANTD3 Gallus gallus ENSGALG00000013403 I
ENSGGOG00000026943 Gorilla gorilla ENSGGOG00000026943 I
MSANTD3 Loxodonta africana ENSLAFG00000031827 I
MSANTD3 Meleagris gallopavo ENSMGAG00000007604 I
MSANTD3 Myotis lucifugus ENSMLUG00000029223 I
MSANTD3-TMEFF1 Macaca mulatta ENSMMUG00000009775 I
MSANTD3 Monodelphis domestica ENSMODG00000012608 I
ENSMPUG00000006828 Mustela putorius furo ENSMPUG00000006828 I
Msantd3 Mus musculus ENSMUSG00000039693 I
ENSNLEG00000017101 Nomascus leucogenys ENSNLEG00000017101 I
MSANTD3 Ornithorhynchus anatinus ENSOANG00000002115 I
ENSOARG00000007598 Ovis aries ENSOARG00000007598 I
MSANTD3-TMEFF1 Oryctolagus cuniculus ENSOCUG00000006373 I
MSANTD3 Otolemur garnettii ENSOGAG00000024703 I
ENSP00000364022 Macaca fascicularis ENSP00000364022 I
ENSPPYG00000019447 Pongo abelii ENSPPYG00000019447 I
MSANTD3 Pan troglodytes ENSPTRG00000038720 I
Msantd3 Rattus norvegicus ENSRNOG00000008159 I
ENSSHAG00000009700 Sarcophilus harrisii ENSSHAG00000009700 I
ENSSSCG00000005390 Sus scrofa ENSSSCG00000005390 I
ENSSTOG00000026763 Ictidomys tridecemlineatus ENSSTOG00000026763 I
MSANTD3 Taeniopygia guttata ENSTGUG00000008752 I
Gfo_R006190 Geospiza fortis Gfo_R006190 I
Pvit_18499 Pogona vitticeps Pvit_18499 I
Tal_R010083 Tyto alba Tal_R010083 I
msantd3 Xenopus tropicalis XB-GENE-5737820 I
msantd3.L Xenopus laevis XB-GENE-5737853 I