Pavir.Ib04166 (Panicum virgatum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Pavir.Ib04166 T343187_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.776 0.776
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.776 0.776
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.890 0.890
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.827 0.827
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.724 0.724
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.724 0.724
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.724 0.724
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.724 0.724
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.724 0.724
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.724 0.724
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.724 0.724
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.724 0.724
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.724 0.724
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04166.1.p TBP 9 80
Pavir.Ib04166.1.p TBP 88 171
Pavir.Ib04166.2.p TBP 1 43
Pavir.Ib04166.2.p TBP 51 134

Links

Other TBP family TFs
Other Panicum virgatum TFs

773 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012330 Aedes aegypti AAEL012330 I 0.819
AALB006989 Anopheles albimanus AALB006989 I 0.827
Aan_R011539 Calypte anna Aan_R011539 I 0.803
AARA005418 Anopheles arabiensis AARA005418 I 0.827
AATE010335 Anopheles atroparvus AATE010335 I 0.827
ACAC_0000032501 Angiostrongylus cantonensis ACAC_0000032501 I 0.724
ACEP14716 Atta cephalotes ACEP14716 I 0.835
ACHR004528 Anopheles christyi ACHR004528 I 0.827
ACOC_0000950001 Angiostrongylus costaricensis ACOC_0000950001 I 0.724
ACOM022852 Anopheles coluzzii ACOM022852 I 0.827
ACUA022207 Anopheles culicifacies ACUA022207 I 0.827
ACYPI001633 Acyrthosiphon pisum ACYPI001633 I 0.827
ADAC000533 Anopheles darlingi ADAC000533 I 0.827
ADIR004511 Anopheles dirus ADIR004511 I 0.827
AEPI009613 Anopheles epiroticus AEPI009613 I 0.827
AFAF020957 Anopheles farauti AFAF020957 I 0.827
Afo_R001483 Aptenodytes forsteri Afo_R001483 I 0.827
Afo_R014360 Aptenodytes forsteri Afo_R014360 I 0.811
AFUN000514 Anopheles funestus AFUN000514 I 0.827
AGAP010958 Anopheles gambiae AGAP010958 I 0.827
Alligator_sinensis_CCG004402.1 Alligator sinensis Alligator_sinensis_CCG004402.1 I 0.701
Alligator_sinensis_CCG013163.1 Alligator sinensis Alligator_sinensis_CCG013163.1 I 0.827
AMEM009001 Anopheles merus AMEM009001 I 0.827
AMIN009249 Anopheles minimus AMIN009249 I 0.827
ANCCAN_09966 Ancylostoma caninum ANCCAN_09966 I 0.724
ANCCEY_07137 Ancylostoma ceylanicum ANCCEY_07137 I 0.724
ANCDUO_27670 Ancylostoma duodenale ANCDUO_27670 I 0.724
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.780
AQUA001233 Anopheles quadriannulatus AQUA001233 I 0.827
ASIS007912 Anopheles sinensis ASIS007912 I 0.827
ASTEI09026 Anopheles stephensi ASTEI09026 I 0.827
A_00068 Schistosoma haematobium A_00068 I 0.803
BGIBMGA010619 Bombyx mori BGIBMGA010619 I 0.843
BGLB001531 Biomphalaria glabrata BGLB001531 I 0.701
Bm5856 Brugia malayi Bm5856 I 0.724
Brh_R003962 Buceros rhinoceros Brh_R003962 I 0.795
Brh_R009637 Buceros rhinoceros Brh_R009637 I 0.772
BTMF_0000332301 Brugia timori BTMF_0000332301 I 0.724
CapteG209597 Capitella teleta CapteG209597 I 0.835
CBG09138 Caenorhabditis briggsae CBG09138 I 0.717
CBN01059 Caenorhabditis brenneri CBN01059 I 0.717
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.835
CGI_10006940 Crassostrea gigas CGI_10006940 I 0.764
CJA15284 Caenorhabditis japonica CJA15284 I 0.717
CPIJ007600 Culex quinquefasciatus CPIJ007600 I 0.819
CPIJ018368 Culex quinquefasciatus CPIJ018368 I 0.819
CpipJ_CPIJ007600 Culex pipiens CpipJ_CPIJ007600 I 0.819
CpipJ_CPIJ018368 Culex pipiens CpipJ_CPIJ018368 I 0.819
CRE07760 Caenorhabditis remanei CRE07760 I 0.717
csin110354 Clonorchis sinensis csin110354 I 0.795
D917_07868 Trichinella nativa D917_07868 I 0.717
D918_02710 Trichuris suis D918_02710 I 0.724
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.819
DICVIV_03239 Dictyocaulus viviparus DICVIV_03239 I 0.724
DME_0000305201 Dracunculus medinensis DME_0000305201 I 0.724
EEL_0000831901 Elaeophora elaphi EEL_0000831901 I 0.724
EFV53163 Trichinella spiralis EFV53163 I 0.717
TBP Anolis carolinensis ENSACAG00000002576 I 0.827
ENSAMEG00000017055 Ailuropoda melanoleuca ENSAMEG00000017055 I 0.827
ENSAMXG00000000325 Astyanax mexicanus ENSAMXG00000000325 I 0.811
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I 0.827
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.803
ENSAPLG00000012687 Anas platyrhynchos ENSAPLG00000012687 I 0.827
ENSBTAG00000002545 Bos taurus ENSBTAG00000002545 I 0.795
TBPL2 Bos taurus ENSBTAG00000018277 I 0.780
ENSBTAP00000010109-D2 Bos grunniens ENSBTAP00000010109-D2 I 0.827
ENSBTAP00000024325-D1 Bos grunniens ENSBTAP00000024325-D1 I 0.780
TBP Canis familiaris ENSCAFG00000004119 I 0.827
TBPL2 Canis familiaris ENSCAFG00000015052 I 0.795
ENSCING00000002679 Ciona intestinalis ENSCING00000002679 I 0.780
TBPL2 Callithrix jacchus ENSCJAG00000018372 I 0.803
TBP Callithrix jacchus ENSCJAG00000020638 I 0.827
ENSCPOG00000001188 Cavia porcellus ENSCPOG00000001188 I 0.827
TBPL2 Cavia porcellus ENSCPOG00000006151 I 0.780
ENSCSAG00000011839 Chlorocebus sabaeus ENSCSAG00000011839 I
ENSCSAG00000014616 Chlorocebus sabaeus ENSCSAG00000014616 I
ENSCSAVG00000007153 Ciona savignyi ENSCSAVG00000007153 I 0.787
tbp Danio rerio ENSDARG00000014994 I 0.827
tbpl2 Danio rerio ENSDARG00000097302 I 0.811
ATG14 Dasypus novemcinctus ENSDNOG00000015108 I 0.795
ENSDNOG00000037993 Dasypus novemcinctus ENSDNOG00000037993 I 0.827
ENSDNOG00000047848 Dasypus novemcinctus ENSDNOG00000047848 I 0.827
Tbpl2 Dipodomys ordii ENSDORG00000003307 I 0.795
ENSDORG00000011521 Dipodomys ordii ENSDORG00000011521 I 0.827
TBP Equus caballus ENSECAG00000008516 I 0.827
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.772
TBPL2 Erinaceus europaeus ENSEEUG00000008616 I
ENSFALG00000003238 Ficedula albicollis ENSFALG00000003238 I 0.827
ENSFALG00000003735 Ficedula albicollis ENSFALG00000003735 I
TBP Homo sapiens ENSG00000112592 D 0.827
TBPL2 Homo sapiens ENSG00000182521 I 0.811
tbpl2 Gasterosteus aculeatus ENSGACG00000003968 I 0.803
tbp Gasterosteus aculeatus ENSGACG00000016147 I 0.827
TBP Gallus gallus ENSGALG00000011171 I 0.827
TBPL2 Gallus gallus ENSGALG00000012145 I 0.811
TBPL2 Gorilla gorilla ENSGGOG00000001055 I 0.811
TBP Gorilla gorilla ENSGGOG00000011840 I 0.827
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I 0.827
ENSLACG00000005118 Latimeria chalumnae ENSLACG00000005118 I 0.827
ENSLACG00000019034 Latimeria chalumnae ENSLACG00000019034 I 0.811
TBP Loxodonta africana ENSLAFG00000006043 I 0.827
TBPL2 Loxodonta africana ENSLAFG00000017299 I 0.795
ENSLOCG00000011741 Lepisosteus oculatus ENSLOCG00000011741 I
ENSLOCG00000015481 Lepisosteus oculatus ENSLOCG00000015481 I 0.827
TBP Meleagris gallopavo ENSMGAG00000012179 I 0.827
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.811
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.803
TBP Myotis lucifugus ENSMLUG00000014582 I 0.827
TBPL2 Myotis lucifugus ENSMLUG00000015690 I 0.811
TBP Macaca mulatta ENSMMUG00000019917 I 0.827
TBP Monodelphis domestica ENSMODG00000005484 I 0.827
TBPL2 Monodelphis domestica ENSMODG00000007535 I 0.780
ENSMPUG00000005807 Mustela putorius furo ENSMPUG00000005807 I 0.795
ENSMPUG00000007213 Mustela putorius furo ENSMPUG00000007213 I 0.827
Tbp Mus musculus ENSMUSG00000014767 D 0.827
Tbpl2 Mus musculus ENSMUSG00000061809 I 0.764
ENSNLEG00000000290 Nomascus leucogenys ENSNLEG00000000290 I 0.827
ENSNLEG00000012821 Nomascus leucogenys ENSNLEG00000012821 I 0.811
ENSOANG00000012858 Ornithorhynchus anatinus ENSOANG00000012858 I 0.780
ENSOARG00000005142 Ovis aries ENSOARG00000005142 I 0.827
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.772
ENSOARG00000021094 Ovis aries ENSOARG00000021094 I 0.780
TBP Oryctolagus cuniculus ENSOCUG00000007979 I 0.827
TBPL2 Oryctolagus cuniculus ENSOCUG00000014738 I 0.811
TBP Otolemur garnettii ENSOGAG00000013997 I 0.827
TBPL2 Otolemur garnettii ENSOGAG00000030735 I 0.748
ENSONIG00000011742 Oreochromis niloticus ENSONIG00000011742 I 0.795
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I 0.827
TBPL2 Ochotona princeps ENSOPRG00000016699 I 0.811
tbp Oryzias latipes ENSORLG00000010757 I 0.827
ENSP00000247219 Macaca fascicularis ENSP00000247219 I 0.811
ENSP00000375942 Macaca fascicularis ENSP00000375942 I 0.827
ENSPANG00000000569 Papio anubis ENSPANG00000000569 I 0.827
ENSPANG00000015296 Papio anubis ENSPANG00000015296 I 0.811
ENSPFOG00000014770 Poecilia formosa ENSPFOG00000014770 I 0.819
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.827
ENSPPYG00000005840 Pongo abelii ENSPPYG00000005840 I 0.803
ENSPPYG00000017192 Pongo abelii ENSPPYG00000017192 I 0.827
ENSPSIG00000010865 Pelodiscus sinensis ENSPSIG00000010865 I 0.811
ENSPSIG00000013104 Pelodiscus sinensis ENSPSIG00000013104 I 0.827
TBPL2 Pan troglodytes ENSPTRG00000006376 I 0.811
TBP Pan troglodytes ENSPTRG00000018827 I 0.827
TBPL2 Pteropus vampyrus ENSPVAG00000001280 I 0.803
TBP Pteropus vampyrus ENSPVAG00000010820 I 0.827
Tbp Rattus norvegicus ENSRNOG00000001489 I 0.827
Tbpl2 Rattus norvegicus ENSRNOG00000033682 I 0.756
TBPL2 Sorex araneus ENSSARG00000002412 I 0.780
ENSSHAG00000015821 Sarcophilus harrisii ENSSHAG00000015821 I 0.827
TBPL2 Sus scrofa ENSSSCG00000005059 I 0.795
ENSSSCG00000022683 Sus scrofa ENSSSCG00000022683 I 0.827
ENSSTOG00000008402 Ictidomys tridecemlineatus ENSSTOG00000008402 I 0.827
ENSSTOG00000015196 Ictidomys tridecemlineatus ENSSTOG00000015196 I
TBPL2 Tupaia belangeri ENSTBEG00000003892 I
TBP Tupaia belangeri ENSTBEG00000004700 I 0.827
TBP Taeniopygia guttata ENSTGUG00000009824 I 0.827
TBPL2 Taeniopygia guttata ENSTGUG00000013070 I 0.803
tbpl2 Tetraodon nigroviridis ENSTNIG00000002597 I 0.803
tbp Tetraodon nigroviridis ENSTNIG00000017681 I 0.819
tbp Takifugu rubripes ENSTRUG00000007200 I 0.819
trf3 Takifugu rubripes ENSTRUG00000009283 I 0.803
ENSTSYG00000001512 Tarsius syrichta ENSTSYG00000001512 I 0.827
ENSTSYG00000005346 Tarsius syrichta ENSTSYG00000005346 I 0.772
TBPL2 Tursiops truncatus ENSTTRG00000002034 I 0.811
TBP Tursiops truncatus ENSTTRG00000014825 I 0.827
ENSXMAG00000001362 Xiphophorus maculatus ENSXMAG00000001362 I 0.795
ENSXMAG00000014937 Xiphophorus maculatus ENSXMAG00000014937 I 0.819
estExt_fgenesh2_pg.C_680056 Branchiostoma floridae estExt_fgenesh2_pg.C_680056 I 0.724
Eucgr.J01752 Eucalyptus grandis Eucgr.J01752 I 0.992
EVEC_0000621801 Enterobius vermicularis EVEC_0000621801 I 0.717
Tbp Drosophila melanogaster FBgn0003687 I 0.811
Tbp Drosophila virilis FBgn0041651 I 0.811
GA22088 Drosophila pseudoobscura FBgn0082072 I 0.811
GF11627 Drosophila ananassae FBgn0088667 I 0.811
GG20753 Drosophila erecta FBgn0112940 I 0.811
GH23121 Drosophila grimshawi FBgn0130578 I 0.811
GI18943 Drosophila mojavensis FBgn0141682 I 0.811
GL11271 Drosophila persimilis FBgn0148880 I 0.811
GM15696 Drosophila sechellia FBgn0170612 I 0.811
GD25175 Drosophila simulans FBgn0196487 I 0.811
GJ14917 Drosophila virilis FBgn0202120 I 0.811
GK10649 Drosophila willistoni FBgn0212662 I 0.811
GE13685 Drosophila yakuba FBgn0231340 I 0.811
GB47180 Apis mellifera GB47180 I 0.835
Gfo_R009933 Geospiza fortis Gfo_R009933 I 0.827
HCOI00585200 Haemonchus contortus HCOI00585200 I 0.724
HCOI02047500 Haemonchus contortus HCOI02047500 I 0.724
HelroG86082 Helobdella robusta HelroG86082 I 0.803
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.827
HMEL016424 Heliconius melpomene HMEL016424 I 0.835
Hsal_00478--XP_623088.1_APIME Harpegnathos saltator Hsal_00478--XP_623088.1_APIME I 0.843
ISCW019416 Ixodes scapularis ISCW019416 I 0.827
KGM_04261 Danaus plexippus KGM_04261 I 0.835
L798_11200 Zootermopsis nevadensis L798_11200 I 0.835
LCUP012241 Lucilia cuprina LCUP012241 I 0.811
LDEC008856 Leptinotarsa decemlineata LDEC008856 I 0.827
LLOJ006615 Lutzomyia longipalpis LLOJ006615 I 0.827
LOAG_01904 Loa loa LOAG_01904 I 0.724
LotgiG129673 Lottia gigantea LotgiG129673 I 0.827
MCINX007129 Melitaea cinxia MCINX007129 I 0.835
MDOA014641 Musca domestica MDOA014641 I 0.811
Myotis_brandtii_FAM120B_10014687 Myotis brandtii Myotis_brandtii_FAM120B_10014687 I 0.827
Myotis_brandtii_TBPL2_10011178 Myotis brandtii Myotis_brandtii_TBPL2_10011178 I 0.701
nAv.1.0.1.g05339 Acanthocheilonema viteae nAv.1.0.1.g05339 I 0.724
nDi.2.2.2.g01504 Dirofilaria immitis nDi.2.2.2.g01504 I 0.724
NECAME_03068 Necator americanus NECAME_03068 I 0.724
NEMVEDRAFT_v1g203375 Nematostella vectensis NEMVEDRAFT_v1g203375 I 0.827
nLs.2.1.2.g02336 Litomosoides sigmodontis nLs.2.1.2.g02336 I 0.724
nOo.2.0.1.g04267 Onchocerca ochengi nOo.2.0.1.g04267 I 0.724
nRc.2.0.1.g22836 Romanomermis culicivorax nRc.2.0.1.g22836 I 0.756
Ocbimv22013703m.g Octopus bimaculoides Ocbimv22013703m.g I 0.819
Ogr19073 Ophisaurus gracilis Ogr19073 I 0.827
PHUM533080 Pediculus humanus PHUM533080 I 0.835
PK25605.1 Cannabis sativa PK25605.1 I 0.850
PPA00840 Pristionchus pacificus PPA00840 I 0.740
PPAI004956 Phlebotomus papatasi PPAI004956 I 0.827
Pvit_02083 Pogona vitticeps Pvit_02083 I 0.827
Pvit_04001 Pogona vitticeps Pvit_04001 I 0.811
Sakowv30026288m.g Saccoglossus kowalevskii Sakowv30026288m.g I 0.835
scaffold547-EXSNAP2012.2 Pristionchus exspectatus scaffold547-EXSNAP2012.2 I 0.740
SINV24483 Solenopsis invicta SINV24483 I 0.843
SMAR002219 Strigamia maritima SMAR002219 I 0.827
Smp_098950 Schistosoma mansoni Smp_098950 I 0.803
SMUV_0000093601 Syphacia muris SMUV_0000093601 I 0.717
SPU_012621 Strongylocentrotus purpuratus SPU_012621 I 0.819
SPU_014099 Strongylocentrotus purpuratus SPU_014099 I 0.819
SVUK_0000188301 Strongylus vulgaris SVUK_0000188301 I
T265_13707 Opisthorchis viverrini T265_13707 I 0.795
Tal_R008176 Tyto alba Tal_R008176 I 0.780
TC008403 Tribolium castaneum TC008403 I 0.819
TCLT_0000047501 Thelazia callipaeda TCLT_0000047501 I 0.724
TCNE_0001669001 Toxocara canis TCNE_0001669001 I 0.724
tetur35g00490 Tetranychus urticae tetur35g00490 I 0.827
TMUE_s0157001700 Trichuris muris TMUE_s0157001700 I 0.724
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.819
TTRE_0000685401 Trichuris trichiura TTRE_0000685401 I 0.724
tbp-1 Caenorhabditis elegans WBGene00006542 I 0.717
WBGene00245666 Onchocerca volvulus WBGene00245666 I 0.724
tbp Xenopus tropicalis XB-GENE-488470 I 0.827
tbp.L Xenopus laevis XB-GENE-6253887 I 0.827
tbp.S Xenopus laevis XB-GENE-865786 I 0.827
tbpl2 Xenopus tropicalis XB-GENE-876138 I 0.811
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.811
XP_002160884.1 Hydra magnipapillata XP_002160884.1 I 0.827
XP_002160918.1 Hydra magnipapillata XP_002160918.1 I 0.827
YQE_02631 Dendroctonus ponderosae YQE_02631 I 0.827