Bo3g066540 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo3g066540 T343736_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.970 0.694
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.968 0.685
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.957 0.556
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.957 0.556
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.957 0.556
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.934 0.484
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.894 0.387
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.884 0.403
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.881 0.395
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.869 0.379
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.853 0.363
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.848 0.363
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.845 0.371
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.845 0.371
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g066540.1 TCP 50 232

Links

Other TCP family TFs
Other Brassica oleracea TFs

417 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CCM_01638 Cordyceps militaris CCM_01638 N 0.000
FFUJ_08424 Fusarium fujikuroi FFUJ_08424 N 0.000
fgenesh1_pg.sca_12_chr5_2_0000282 Nectria haematococca fgenesh1_pg.sca_12_chr5_2_0000282 N 0.000
fgenesh1_pg.sca_12_chr5_2_0000331 Nectria haematococca fgenesh1_pg.sca_12_chr5_2_0000331 N 0.000
FPSE_08824 Fusarium pseudograminearum FPSE_08824 N 0.000
G647_05188 Cladophialophora carrionii G647_05188 N 0.000
GGTG_09020 Gaeumannomyces graminis GGTG_09020 N 0.000
HMPREF1541_03967 Cyphellophora europaea HMPREF1541_03967 N 0.000
HMPREF1541_05522 Cyphellophora europaea HMPREF1541_05522 N 0.000
LEMA_P109100.1 Leptosphaeria maculans LEMA_P109100.1 N 0.000
NechaG80102 Fusarium solani NechaG80102 N 0.000
NechaG80151 Fusarium solani NechaG80151 N 0.000
OIDMADRAFT_204080 Oidiodendron maius OIDMADRAFT_204080 I 0.000
Pc13g06530 Penicillium chrysogenum Pc13g06530 N 0.000
PCH_Pc13g06530 Penicillium rubens PCH_Pc13g06530 N 0.000
PEX1_099950 Penicillium expansum PEX1_099950 N 0.000
PITC_065540 Penicillium italicum PITC_065540 N 0.000
PV04_03384 Capronia semiimmersa PV04_03384 N 0.000
PV05_09503 Exophiala xenobiotica PV05_09503 N 0.000
PV09_04169 Verruconis gallopava PV09_04169 N 0.000
PV11_05636 Exophiala sideris PV11_05636 N 0.000
SS1G_02054 Sclerotinia sclerotiorum SS1G_02054 N 0.000
THITE_2132051 Thielavia terrestris THITE_2132051 I 0.000
TRIATDRAFT_222577 Trichoderma atroviride TRIATDRAFT_222577 N 0.000
TRIREDRAFT_60665 Trichoderma reesei TRIREDRAFT_60665 N 0.000
TRIVIDRAFT_149245 Trichoderma virens TRIVIDRAFT_149245 N 0.000
U727_00430311331 Penicillium solitum U727_00430311331 N 0.000
V499_04467 Pseudogymnoascus pannorum V499_04467 N 0.000
V499_06431 Pseudogymnoascus pannorum V499_06431 N 0.000
VHEMI09976 Torrubiella hemipterigena VHEMI09976 N 0.000
X797_011070 Metarhizium robertsii X797_011070 N 0.000
Z518_04643 Rhinocladiella mackenziei Z518_04643 N 0.000