CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo7g084120 *(Brassica oleracea)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	Bo7g084120	T343753_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.970	0.613
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.969	0.605
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.969	0.605
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.969	0.605
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.969	0.605
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.967	0.621
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.966	0.565
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.965	0.581
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.956	0.500
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.956	0.500
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.953	0.484
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.952	0.452
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.952	0.476
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.952	0.476
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.952	0.476
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.950	0.476
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.950	0.476
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.950	0.476
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.950	0.476
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.947	0.476
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.947	0.484
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.946	0.444
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.945	0.492
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.945	0.508
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.940	0.444
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.940	0.476
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.938	0.427
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.936	0.468
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.936	0.468
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.933	0.476
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.933	0.476
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.932	0.460
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.928	0.452
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.877	0.427
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.877	0.427
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo7g084120.1	TCP	74	317	SSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASAAAVSSHHLQGGSLTAGLMISHELDGGGGSSSGRPNWGVGGGDGVGGASRSSLPTGLWPNVAGFGAGVQATGMMSDGGGYRIGFPGFDYPGGAMSFASILGGGSNNQMPGLELGLAQEGNVGVLNPHSFAQIYQQQMSQAQAQGRVLHHTLLHNPSHEEHQQESGEKDDSQGSG

Links
Other TCP family TFs
Other *Brassica oleracea* TFs

650 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O1_03398	Capronia coronata	A1O1_03398	I
A1O3_07022	Capronia epimyces	A1O3_07022	I
A1O5_07806	Cladophialophora psammophila	A1O5_07806	I
A1O5_09915	Cladophialophora psammophila	A1O5_09915	I
A1O7_05830	Cladophialophora yegresii	A1O7_05830	I
A1O9_03904	Exophiala aquamarina	A1O9_03904	I
BDDG_01581	Blastomyces dermatitidis	BDDG_01581	I
ACLA_057460	Aspergillus clavatus	CADACLAG00005513	I
CADAFLAG00013310	Aspergillus flavus	CADAFLAG00013310	I
AFUA_8G04130	Aspergillus fumigatus	CADAFUAG00003064	I
CADANGAG00013361	Aspergillus niger	CADANGAG00013361	I
ANIA_01425	Aspergillus nidulans	CADANIAG00008037	D
CADAORAG00009957	Aspergillus oryzae	CADAORAG00009957	I
NFIA_096840	Neosartorya fischeri	CADNFIAG00009134	I
CIMG_04417	Coccidioides immitis	CIMG_04417	I
CPC735_073310	Coccidioides posadasii	CPC735_073310	I
EURHEDRAFT_514838	Aspergillus ruber	EURHEDRAFT_514838	I
G647_06695	Cladophialophora carrionii	G647_06695	I
GMDG_05434	Pseudogymnoascus destructans	GMDG_05434	N
GSTUM_00012254001	Tuber melanosporum	GSTUM_00012254001	I
HCBG_08757	Histoplasma capsulatum	HCBG_08757	I
HMPREF1120_06957	Exophiala dermatitidis	HMPREF1120_06957	I
HMPREF1541_01964	Cyphellophora europaea	HMPREF1541_01964	I
PAAG_01359	Paracoccidioides sp lutzii	PAAG_01359	I
Pc21g11250	Penicillium chrysogenum	Pc21g11250	I
PCH_Pc21g11250	Penicillium rubens	PCH_Pc21g11250	I
PDE_00959	Penicillium oxalicum	PDE_00959	I
PDIP_56920	Penicillium digitatum	PDIP_56920	I
PITC_050730	Penicillium italicum	PITC_050730	I
PMAA_086890	Penicillium marneffei	PMAA_086890	I
PMAA_086890	Talaromyces marneffei	PMAA_086890	I
PV04_06196	Capronia semiimmersa	PV04_06196	I
PV05_04966	Exophiala xenobiotica	PV05_04966	I
PV06_01341	Exophiala oligosperma	PV06_01341	I
PV07_04224	Cladophialophora immunda	PV07_04224	I
PV08_00166	Exophiala spinifera	PV08_00166	I
PV11_05821	Exophiala sideris	PV11_05821	N
PVAR5_4646	Byssochlamys spectabilis	PVAR5_4646	I
TSTA_122170	Talaromyces stipitatus	TSTA_122170	I
U727_00433961191	Penicillium solitum	U727_00433961191	I
UREG_01649	Uncinocarpus reesii	UREG_01649	I
V499_09210	Pseudogymnoascus pannorum	V499_09210	N
Z517_03564	Fonsecaea pedrosoi	Z517_03564	N
Z517_04277	Fonsecaea pedrosoi	Z517_04277	I
Z517_05321	Fonsecaea pedrosoi	Z517_05321	N
Z517_07454	Fonsecaea pedrosoi	Z517_07454	I
Z518_08360	Rhinocladiella mackenziei	Z518_08360	I

Bo7g084120 (Brassica oleracea) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

650 Related TFs

Bo7g084120 **(Brassica oleracea)
TCP**