CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCP24 *(Arabidopsis lyrata)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	fgenesh2_kg.1__3195__AT1G30210.2	T343836_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP24 M02506_2.00	Arabidopsis lyrata	NBKKNNMMVN	NBKKNNMMVN	PBM Weirauch et al.(2014) pTH9227	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP24 M02499_2.00	Arabidopsis thaliana	NNNNRVMCVV	BBGKBYNNNN	PBM Weirauch et al.(2014) pTH7337	0.981	0.926
TCP24 M07272_2.00	Arabidopsis thaliana	GTGGGGACCAC	GTGGTCCCCAC	Dap-seq OMalley et al.(2016) TCP24_colamp_a	0.981	0.926
TCP24 M07273_2.00	Arabidopsis thaliana	NNBGGGACCACH	DGTGGTCCCVNN	Dap-seq OMalley et al.(2016) TCP24_col	0.981	0.926
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M02506_2.00	TCP	48	144	SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLINTNFDYLDENQNQTKSAGSSGTSESSLLSLSRT
M02506_2.00	TCP	111	165	INTNFDYLDENQNQTKSAGSSGTSESSLLSLSRTEIRGKARERARERTAKERDKD

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh2_kg.1__3195__AT1G30210.2	TCP	48	144	SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLINTNFDYLDENQNQTKSAGSSGTSESSLLSLSRT
fgenesh2_kg.1__3195__AT1G30210.2	TCP	111	165	INTNFDYLDENQNQTKSAGSSGTSESSLLSLSRTEIRGKARERARERTAKERDKD

Links
Other TCP family TFs
Other *Arabidopsis lyrata* TFs