CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PRUPE_ppa024948mg *(Prunus persica)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	PRUPE_ppa024948mg	T344328_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.932	0.769
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.931	0.692
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.931	0.718
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.929	0.577
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.929	0.654
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.926	0.615
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.926	0.615
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.926	0.615
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.926	0.615
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.913	0.603
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.913	0.603
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.913	0.551
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.912	0.526
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.912	0.526
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.910	0.564
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.910	0.577
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.910	0.577
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.910	0.577
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.909	0.590
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.909	0.590
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.909	0.590
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.909	0.590
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.909	0.513
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.908	0.590
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.906	0.590
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.905	0.615
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.904	0.603
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.902	0.551
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.898	0.551
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.898	0.551
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.894	0.513
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.883	0.500
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.882	0.513
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.835	0.538
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.835	0.538
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EMJ00003	TCP	5	139	KPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTILASALTAAGGSVSQLGTSLSAGLHQKIDKLGGGGGPAMVGGNLGRPHVATGLWPPVSSFGFQSSSCREGSCDIGETHEDDPENKKLSWSH

Links
Other TCP family TFs
Other *Prunus persica* TFs

636 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R002286	Calypte anna	Aan_R002286	N
Alligator_sinensis_CCG004796.1	Alligator sinensis	Alligator_sinensis_CCG004796.1	N
Brh_R008711	Buceros rhinoceros	Brh_R008711	N
ENSAMEG00000018065	Ailuropoda melanoleuca	ENSAMEG00000018065	N
ENSBTAG00000019881	Bos taurus	ENSBTAG00000019881	N
ENSCJAG00000017194	Callithrix jacchus	ENSCJAG00000017194	N
ENSCPOG00000015378	Cavia porcellus	ENSCPOG00000015378	N
ENSECAG00000014754	Equus caballus	ENSECAG00000014754	N
ENSEEUG00000015300	Erinaceus europaeus	ENSEEUG00000015300	N
ENSFALG00000007585	Ficedula albicollis	ENSFALG00000007585	N
ENSLAFG00000026326	Loxodonta africana	ENSLAFG00000026326	N
ENSMICG00000000240	Microcebus murinus	ENSMICG00000000240	N
1700034E13Rik	Mus musculus	ENSMUSG00000024532	N
ENSNLEG00000011997	Nomascus leucogenys	ENSNLEG00000011997	N
ENSOARG00000000312	Ovis aries	ENSOARG00000000312	N
ENSPSIG00000010438	Pelodiscus sinensis	ENSPSIG00000010438	N
Zfp474	Rattus norvegicus	ENSRNOG00000018724	N
ENSSARG00000008113	Sorex araneus	ENSSARG00000008113	N
ENSSHAG00000015313	Sarcophilus harrisii	ENSSHAG00000015313	N
ENSSTOG00000016375	Ictidomys tridecemlineatus	ENSSTOG00000016375	N
Gfo_R011712	Geospiza fortis	Gfo_R011712	N
Myotis_brandtii_ZNF474_10015777	Myotis brandtii	Myotis_brandtii_ZNF474_10015777	N

PRUPE_ppa024948mg (Prunus persica) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

636 Related TFs

PRUPE_ppa024948mg **(Prunus persica)
TCP**