CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ca_20021 *(Cicer arietinum)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Ca_20021	T344519_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.971	0.781
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.968	0.667
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.968	0.667
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.959	0.544
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.954	0.553
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.954	0.544
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.954	0.526
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.952	0.544
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.950	0.544
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.950	0.544
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.950	0.544
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.950	0.544
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.950	0.526
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.950	0.526
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.948	0.535
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.943	0.474
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.942	0.474
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.938	0.526
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.938	0.526
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.935	0.482
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.935	0.482
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.934	0.491
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.934	0.491
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.934	0.491
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.934	0.526
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.933	0.456
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.932	0.491
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.932	0.491
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.932	0.491
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.932	0.491
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.930	0.482
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.930	0.465
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.925	0.456
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.861	0.447
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.861	0.447
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ca_20021	TCP	30	200	PPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFHPPSPFILGKRLRSEQDDAVSVAAPTAPPALWALPSRPDFAQLWSFAAAAAQPPSEVLSISPQQQQHNSLFHHQQQQQQQHQASMGEASAARLGN

Links
Other TCP family TFs
Other *Cicer arietinum* TFs

645 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Cmyd_10007335	Chelonia mydas	Cmyd_10007335	I
ENSAMEG00000006419	Ailuropoda melanoleuca	ENSAMEG00000006419	I
ENSAMXG00000001207	Astyanax mexicanus	ENSAMXG00000001207	I
ZBTB3	Bos taurus	ENSBTAG00000021329	I
ENSBTAP00000051139-D1	Bos grunniens	ENSBTAP00000051139-D1	I
ZBTB3	Canis familiaris	ENSCAFG00000015650	I
ZBTB3	Choloepus hoffmanni	ENSCHOG00000012845	I
ZBTB3	Callithrix jacchus	ENSCJAG00000018693	I
ZBTB3	Cavia porcellus	ENSCPOG00000011665	I
ENSCSAG00000006712	Chlorocebus sabaeus	ENSCSAG00000006712	I
zbtb3	Danio rerio	ENSDARG00000036235	I
ENSDNOG00000006546	Dasypus novemcinctus	ENSDNOG00000006546	I
ZBTB3	Dasypus novemcinctus	ENSDNOG00000043011	I
Zbtb3	Dipodomys ordii	ENSDORG00000015697	I
ZBTB3	Felis catus	ENSFCAG00000027690	I
ZBTB3	Homo sapiens	ENSG00000185670	I
zbtb3	Gasterosteus aculeatus	ENSGACG00000016930	I
ZBTB3	Gorilla gorilla	ENSGGOG00000011735	I
ENSLACG00000006879	Latimeria chalumnae	ENSLACG00000006879	I
ENSLOCG00000001327	Lepisosteus oculatus	ENSLOCG00000001327	I
ENSMEUG00000015659	Macropus eugenii	ENSMEUG00000015659	I
ZBTB3	Microcebus murinus	ENSMICG00000009961	I
ZBTB3	Myotis lucifugus	ENSMLUG00000011020	I
ENSMMUG00000014369	Macaca mulatta	ENSMMUG00000014369	I
ENSMODG00000007952	Monodelphis domestica	ENSMODG00000007952	I
ENSMPUG00000013694	Mustela putorius furo	ENSMPUG00000013694	I
Zbtb3	Mus musculus	ENSMUSG00000071661	D
ENSNLEG00000004096	Nomascus leucogenys	ENSNLEG00000004096	I
ENSOANG00000001309	Ornithorhynchus anatinus	ENSOANG00000001309	I
ENSOARG00000016929	Ovis aries	ENSOARG00000016929	I
ZBTB3	Oryctolagus cuniculus	ENSOCUG00000008921	I
ZBTB3	Otolemur garnettii	ENSOGAG00000011414	I
ENSONIG00000005336	Oreochromis niloticus	ENSONIG00000005336	I
ENSP00000378286	Macaca fascicularis	ENSP00000378286	I
ENSPANG00000008469	Papio anubis	ENSPANG00000008469	I
ENSPFOG00000009453	Poecilia formosa	ENSPFOG00000009453	I
ENSPPYG00000003148	Pongo abelii	ENSPPYG00000003148	I
ENSPSIG00000001786	Pelodiscus sinensis	ENSPSIG00000001786	I
ZBTB3	Pan troglodytes	ENSPTRG00000003785	I
ZBTB3	Pteropus vampyrus	ENSPVAG00000003477	I
Zbtb3	Rattus norvegicus	ENSRNOG00000019461	I
ENSSSCG00000025351	Sus scrofa	ENSSSCG00000025351	I
ENSSTOG00000027839	Ictidomys tridecemlineatus	ENSSTOG00000027839	I
zbtb3	Tetraodon nigroviridis	ENSTNIG00000003382	I
zbtb3	Takifugu rubripes	ENSTRUG00000013773	I
ZBTB3	Tursiops truncatus	ENSTTRG00000002477	I
ENSXMAG00000003145	Xiphophorus maculatus	ENSXMAG00000003145	I
Ogr03307	Ophisaurus gracilis	Ogr03307	I
Pvit_09391	Pogona vitticeps	Pvit_09391	I
zbtb3	Xenopus tropicalis	XB-GENE-991962	I

Ca_20021 (Cicer arietinum) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

645 Related TFs

Ca_20021 **(Cicer arietinum)
TCP**