Cucsa.273460 (Cucumis sativus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cucsa.273460 T344647_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.952 0.553
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.952 0.553
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.950 0.520
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.950 0.520
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.950 0.520
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.941 0.512
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.901 0.415
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.891 0.406
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.891 0.398
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.867 0.382
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.848 0.374
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.841 0.358
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.839 0.366
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.839 0.366
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.273460.1 TCP 37 237

Links

Other TCP family TFs
Other Cucumis sativus TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007949 Calypte anna Aan_R007949 N
Afo_R006305 Aptenodytes forsteri Afo_R006305 N
Brh_R011091 Buceros rhinoceros Brh_R011091 N
Cmyd_10013756 Chelonia mydas Cmyd_10013756 N
ARNTL2 Anolis carolinensis ENSACAG00000012446 N
ENSAMEG00000011610 Ailuropoda melanoleuca ENSAMEG00000011610 N
ENSAMXG00000020233 Astyanax mexicanus ENSAMXG00000020233 I
ARNTL2 Bos taurus ENSBTAG00000011804 N
ARNTL2 Canis familiaris ENSCAFG00000011089 N
ENSCSAG00000007636 Chlorocebus sabaeus ENSCSAG00000007636 N
arntl2 Danio rerio ENSDARG00000041381 I
ENSFALG00000003942 Ficedula albicollis ENSFALG00000003942 N
ARNTL2 Felis catus ENSFCAG00000000386 N
ARNTL2 Homo sapiens ENSG00000029153 N
ARNTL2 Gallus gallus ENSGALG00000014096 N
ENSLACG00000009646 Latimeria chalumnae ENSLACG00000009646 N
ENSLOCG00000015224 Lepisosteus oculatus ENSLOCG00000015224 N
ENSMEUG00000007045 Macropus eugenii ENSMEUG00000007045 N
ARNTL2 Meleagris gallopavo ENSMGAG00000013735 N
ARNTL2 Myotis lucifugus ENSMLUG00000003256 N
ARNTL2 Macaca mulatta ENSMMUG00000023249 N
ENSMPUG00000010512 Mustela putorius furo ENSMPUG00000010512 N
ENSNLEG00000005463 Nomascus leucogenys ENSNLEG00000005463 N
ENSOARG00000019779 Ovis aries ENSOARG00000019779 N
ARNTL2 Otolemur garnettii ENSOGAG00000011668 N
ENSONIG00000014665 Oreochromis niloticus ENSONIG00000014665 I
arntl2 Oryzias latipes ENSORLG00000010946 I
ENSP00000266503 Macaca fascicularis ENSP00000266503 N
ENSP00000266503-D1 Bos grunniens ENSP00000266503-D1 N
ENSPANG00000004474 Papio anubis ENSPANG00000004474 N
ARNTL2 Procavia capensis ENSPCAG00000008486 N
ENSPFOG00000016287 Poecilia formosa ENSPFOG00000016287 I
ENSPPYG00000004380 Pongo abelii ENSPPYG00000004380 N
ENSPSIG00000009416 Pelodiscus sinensis ENSPSIG00000009416 N
ARNTL2 Pan troglodytes ENSPTRG00000004788 N
ARNTL2 Pteropus vampyrus ENSPVAG00000013771 N
ARNTL2 Sus scrofa ENSSSCG00000000551 N
ENSSTOG00000001344 Ictidomys tridecemlineatus ENSSTOG00000001344 N
ENSTGUG00000012163 Taeniopygia guttata ENSTGUG00000012163 N
arntl2 Tetraodon nigroviridis ENSTNIG00000012142 I
arntl2 Takifugu rubripes ENSTRUG00000007832 I
ENSTSYG00000005541 Tarsius syrichta ENSTSYG00000005541 N
ARNTL2 Tursiops truncatus ENSTTRG00000012339 N
ENSXMAG00000001482 Xiphophorus maculatus ENSXMAG00000001482 I
Gfo_R015185 Geospiza fortis Gfo_R015185 N
Myotis_brandtii_ARNTL2_10027352 Myotis brandtii Myotis_brandtii_ARNTL2_10027352 N
Ogr07520 Ophisaurus gracilis Ogr07520 N
Pvit_19389 Pogona vitticeps Pvit_19389 N
Tal_R011603 Tyto alba Tal_R011603 N