Bostr.0124s0115 (Boechera stricta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Bostr.0124s0115 T344699_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.968 0.550
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.968 0.550
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.968 0.550
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.964 0.497
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.961 0.490
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.932 0.397
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.892 0.358
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.882 0.364
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.879 0.358
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.870 0.311
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.850 0.325
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.847 0.325
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.847 0.325
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.846 0.291
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0124s0115.1.p TCP 51 218
Bostr.0124s0115.2.p TCP 51 218

Links

Other TCP family TFs
Other Boechera stricta TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002833 Oryza indica BGIOSGA002833 N
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N
evm.TU.supercontig_21.7 Carica papaya evm.TU.supercontig_21.7 N
F775_00759 Aegilops tauschii F775_00759 N
F775_01873 Aegilops tauschii F775_01873 N
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I
GRMZM2G088443 Zea mays GRMZM2G088443 I
GRMZM2G369629 Zea mays GRMZM2G369629 N
LPERR01G03590 Leersia perrieri LPERR01G03590 I
LPERR05G03980 Leersia perrieri LPERR05G03980 N
MLOC_69121 Hordeum vulgare MLOC_69121 N
OB01G13800 Oryza brachyantha OB01G13800 N
OB05G14140 Oryza brachyantha OB05G14140 N
OBART01G03950 Oryza barthii OBART01G03950 N
OBART05G04450 Oryza barthii OBART05G04450 N
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N
OLONG_015419 Oryza longistaminata OLONG_015419 N
OMERI01G03850 Oryza meridionalis OMERI01G03850 N
OMERI05G04410 Oryza meridionalis OMERI05G04410 N
ONIVA01G04390 Oryza nivara ONIVA01G04390 N
ONIVA05G04820 Oryza nivara ONIVA05G04820 N
OPUNC01G03610 Oryza punctata OPUNC01G03610 N
OPUNC05G04080 Oryza punctata OPUNC05G04080 N
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N
OS05G0163900 Oryza sativa OS05G0163900 N
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I
Pavir.J32610 Panicum virgatum Pavir.J32610 N
PDK_20s1551661g004 Phoenix dactylifera PDK_20s1551661g004 N
Sb03g005250 Sorghum bicolor Sb03g005250 N
Sb09g004820 Sorghum bicolor Sb09g004820 N
Si002655m.g Setaria italica Si002655m.g I
Si012213m.g Setaria italica Si012213m.g N
TCM_029711 Theobroma cacao TCM_029711 I
TRAES3BF130100030CFD_g Triticum aestivum TRAES3BF130100030CFD_g N
Traes_1AS_96F0745A2 Triticum aestivum Traes_1AS_96F0745A2 N
Traes_1BS_1F372BED3 Triticum aestivum Traes_1BS_1F372BED3 N
Traes_1DS_CD79239C8 Triticum aestivum Traes_1DS_CD79239C8 N
Traes_3B_2DF1A6E5B Triticum aestivum Traes_3B_2DF1A6E5B N
TRIUR3_07421 Triticum urartu TRIUR3_07421 N
TRIUR3_12818 Triticum urartu TRIUR3_12818 N
TRIUR3_21807 Triticum urartu TRIUR3_21807 N