gene17805-v1.0-hybrid (Fragaria vesca)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 gene17805-v1.0-hybrid T344837_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.954 0.437
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.951 0.430
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.947 0.386
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.947 0.386
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.947 0.386
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.945 0.411
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.898 0.323
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.886 0.316
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.886 0.316
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.853 0.278
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.846 0.291
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.843 0.272
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.839 0.297
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.839 0.297
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna17805.1-v1.0-hybrid TCP 22 315

Links

Other TCP family TFs
Other Fragaria vesca TFs

417 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB08131.1 Alternaria brassicicola AB08131.1 N
AB10540.1 Alternaria brassicicola AB10540.1 N
ARB_01056 Arthroderma benhamiae ARB_01056 N
BDDG_00151 Blastomyces dermatitidis BDDG_00151 N
ACLA_046870 Aspergillus clavatus CADACLAG00004684 N
AFUA_4G07560 Aspergillus fumigatus CADAFUAG00008022 N
NFIA_108640 Neosartorya fischeri CADNFIAG00010194 N
COCC4DRAFT_194294 Bipolaris maydis COCC4DRAFT_194294 N
COCCADRAFT_22008 Bipolaris zeicola COCCADRAFT_22008 N
COCMIDRAFT_26521 Bipolaris oryzae COCMIDRAFT_26521 N
COCSADRAFT_147534 Bipolaris sorokiniana COCSADRAFT_147534 N
COCVIDRAFT_33489 Bipolaris victoriae COCVIDRAFT_33489 N
fgenesh1_pg.C_scaffold_14000107 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_14000107 N
H101_03515 Trichophyton interdigitale H101_03515 N
H102_06195 Trichophyton rubrum H102_06195 N
H105_06234 Trichophyton soudanense H105_06234 N
HCBG_00082 Histoplasma capsulatum HCBG_00082 N
LEMA_P063520.1 Leptosphaeria maculans LEMA_P063520.1 N
MCYG_07183 Arthroderma otae MCYG_07183 N
MCYG_07183 Microsporum canis MCYG_07183 N
MGYG_04684 Microsporum gypseum MGYG_04684 N
MPH_08084 Macrophomina phaseolina MPH_08084 N
PABG_01478 Paracoccidioides brasiliensis PABG_01478 N
PDIP_12360 Penicillium digitatum PDIP_12360 N
PEX1_089410 Penicillium expansum PEX1_089410 N
PFICI_11537 Pestalotiopsis fici PFICI_11537 N
PITC_006180 Penicillium italicum PITC_006180 N
PTRG_08751 Pyrenophora triticirepentis PTRG_08751 N
PTT_14570 Pyrenophora teres PTT_14570 N
SBOR_5966 Sclerotinia borealis SBOR_5966 N
SETTUDRAFT_182079 Setosphaeria turcica SETTUDRAFT_182079 N
SNOG_03792 Phaeosphaeria nodorum SNOG_03792 N
SNOG_03792 Stagonospora nodorum SNOG_03792 N
TEQG_05179 Trichophyton equinum TEQG_05179 N
TESG_04140 Trichophyton tonsurans TESG_04140 N
TRV_02827 Trichophyton verrucosum TRV_02827 N
UCRPA7_1672 Togninia minima UCRPA7_1672 N