Gorai.012G048500 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.012G048500 T344877_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.941 0.522
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.928 0.504
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.923 0.478
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.902 0.504
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.902 0.504
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.899 0.478
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.899 0.478
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.883 0.443
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.876 0.417
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.875 0.409
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.875 0.409
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.857 0.409
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.857 0.409
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.857 0.409
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.844 0.383
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.844 0.383
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G048500.1 TCP 49 193
Gorai.012G048500.2 TCP 49 193

Links

Other TCP family TFs
Other Gossypium raimondii TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013653 Aedes aegypti AAEL013653 N
AARA002613 Anopheles arabiensis AARA002613 N
AARA008085 Anopheles arabiensis AARA008085 N
AATE004417 Anopheles atroparvus AATE004417 N
ACEP26919 Atta cephalotes ACEP26919 N
ACHR000830 Anopheles christyi ACHR000830 N
ACHR003814 Anopheles christyi ACHR003814 N
ACOM025760 Anopheles coluzzii ACOM025760 N
ACUA022967 Anopheles culicifacies ACUA022967 N
ADIR001353 Anopheles dirus ADIR001353 N
ADIR007200 Anopheles dirus ADIR007200 N
AEPI005949 Anopheles epiroticus AEPI005949 N
AEPI009152 Anopheles epiroticus AEPI009152 N
AFAF018377 Anopheles farauti AFAF018377 N
AFUN001038 Anopheles funestus AFUN001038 N
AFUN003868 Anopheles funestus AFUN003868 N
AGAP000336 Anopheles gambiae AGAP000336 N
AGAP007517 Anopheles gambiae AGAP007517 N
AMAM019785 Anopheles maculatus AMAM019785 N
AMEC017669 Anopheles melas AMEC017669 N
AMEM008561 Anopheles merus AMEM008561 N
AMEM015155 Anopheles merus AMEM015155 N
AMIN005487 Anopheles minimus AMIN005487 N
AMIN010411 Anopheles minimus AMIN010411 N
AQUA004406 Anopheles quadriannulatus AQUA004406 N
AQUA007272 Anopheles quadriannulatus AQUA007272 N
ASIS017447 Anopheles sinensis ASIS017447 N
ASTEI08810 Anopheles stephensi ASTEI08810 N
Cflo_02113--XP_396371.3_APIME Camponotus floridanus Cflo_02113--XP_396371.3_APIME N
GB45421 Apis mellifera GB45421 N
HHAL006636-PA Halyomorpha halys HHAL006636-PA N
Hsal_05746--XP_396371.3_APIME Harpegnathos saltator Hsal_05746--XP_396371.3_APIME N
ISCW018321 Ixodes scapularis ISCW018321 N
L798_06110 Zootermopsis nevadensis L798_06110 N
LCUP013707 Lucilia cuprina LCUP013707 N
LDEC018353 Leptinotarsa decemlineata LDEC018353 N
LLOJ009650 Lutzomyia longipalpis LLOJ009650 N
MDOA002006 Musca domestica MDOA002006 N
PHUM375280 Pediculus humanus PHUM375280 N
PPAI002384 Phlebotomus papatasi PPAI002384 N
RPRC008747 Rhodnius prolixus RPRC008747 N
SINV24562 Solenopsis invicta SINV24562 N
SMAR014284 Strigamia maritima SMAR014284 N
TC014666 Tribolium castaneum TC014666 N