PK12847.1 (Cannabis sativa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 PK12847.1 T345105_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.955 0.625
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.954 0.625
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.951 0.536
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.951 0.536
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.951 0.536
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.938 0.545
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.894 0.420
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.889 0.446
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.887 0.438
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.863 0.402
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.853 0.420
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.839 0.402
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.839 0.402
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.836 0.393
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK12847.1 TCP 119 337

Links

Other TCP family TFs
Other Cannabis sativa TFs

423 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_09583 Cicer arietinum Ca_09583 N 0.000
chr4.CM0307.140.nc Lotus japonicus chr4.CM0307.140.nc N 0.000
Ciclev10027510m.g Citrus clementina Ciclev10027510m.g N 0.000
Cla002427 Citrullus lanatus Cla002427 N 0.000
evm.TU.supercontig_20.234 Carica papaya evm.TU.supercontig_20.234 N 0.000
GLYMA05G31410 Glycine max GLYMA05G31410 N 0.000
GLYMA08G14630 Glycine max GLYMA08G14630 N 0.000
GLYMA18G02190 Glycine max GLYMA18G02190 N 0.000
Gorai.003G043500 Gossypium raimondii Gorai.003G043500 N 0.000
Gorai.007G241000 Gossypium raimondii Gorai.007G241000 N 0.000
MTR_3g087530 Medicago truncatula MTR_3g087530 N 0.000
MTR_8g091370 Medicago truncatula MTR_8g091370 N 0.000
PRUPE_ppa016118mg Prunus persica PRUPE_ppa016118mg N 0.000
VIT_00s0357g00120 Vitis vinifera VIT_00s0357g00120 N 0.000