CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GSMUA_Achr9G25670_001 *(Musa acuminata)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	GSMUA_Achr9G25670_001	T345436_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.934
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.934
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.934
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.921
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.921
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.921
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.921
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.882
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.868
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.763
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.671
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.632
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.605
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.605
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.605
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.605
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.605
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.579
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.579
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.579
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.566
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.566
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.566
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.566
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.553
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.553
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.553
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.539
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GSMUA_Achr9P25670_001	TCR/CxC	513	550	CKRCNCKKSKCLKLYCECFAAGVYCSEPCSCQGCFNKP
GSMUA_Achr9P25670_001	TCR/CxC	599	636	KRGCNCKKSNCLKKYCECYQFGVGCSISCRCEGCKNAF

Links
Other TCR/CxC family TFs
Other *Musa acuminata* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R006597	Calypte anna	Aan_R006597	N
Afo_R014607	Aptenodytes forsteri	Afo_R014607	N
CPIJ013490	Culex quinquefasciatus	CPIJ013490	I
CpipJ_CPIJ013490	Culex pipiens	CpipJ_CPIJ013490	I
ENSAPLG00000016417	Anas platyrhynchos	ENSAPLG00000016417	N
ENSBTAP00000021752-D1	Bos grunniens	ENSBTAP00000021752-D1	N
TEAD1	Canis familiaris	ENSCAFG00000007976	I
TEAD1	Callithrix jacchus	ENSCJAG00000010263	I
TEAD1	Cavia porcellus	ENSCPOG00000001830	N
tead1b	Danio rerio	ENSDARG00000059483	I
tead3b	Danio rerio	ENSDARG00000063649	I
TEAD1	Equus caballus	ENSECAG00000008332	I
TEAD1	Homo sapiens	ENSG00000187079	D
TEAD1	Gorilla gorilla	ENSGGOG00000003412	N
ENSLACG00000016717	Latimeria chalumnae	ENSLACG00000016717	N
TEAD1	Macaca mulatta	ENSMMUG00000010875	N
Tead1	Mus musculus	ENSMUSG00000055320	D
ENSNLEG00000017672	Nomascus leucogenys	ENSNLEG00000017672	N
TEAD2	Ornithorhynchus anatinus	ENSOANG00000013933	N
ENSOANG00000021775	Ornithorhynchus anatinus	ENSOANG00000021775	N
ENSP00000355332	Macaca fascicularis	ENSP00000355332	N
ENSPPYG00000003475	Pongo abelii	ENSPPYG00000003475	I
TEAD1	Pan troglodytes	ENSPTRG00000039896	N
TEAD1	Sorex araneus	ENSSARG00000001748	N
ENSSHAG00000015930	Sarcophilus harrisii	ENSSHAG00000015930	I
TEAD1	Sus scrofa	ENSSSCG00000013399	I
TEAD1	Taeniopygia guttata	ENSTGUG00000015995	N
ENSTSYG00000001514	Tarsius syrichta	ENSTSYG00000001514	N
TEAD1	Tursiops truncatus	ENSTTRG00000006621	N
e_gw.291.69.1	Branchiostoma floridae	e_gw.291.69.1	I
Gfo_R013616	Geospiza fortis	Gfo_R013616	N
PPAI001408	Phlebotomus papatasi	PPAI001408	I

GSMUA_Achr9G25670_001 (Musa acuminata) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

GSMUA_Achr9G25670_001 **(Musa acuminata)
TCR/CxC**