CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GSPATT00015259001 *(Paramecium tetraurelia)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	GSPATT00015259001	T345462_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.373
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.347
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.347
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.347
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.347
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.320
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.320
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.310
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.307
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.307
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.307
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.297
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.293
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.293
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.293
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.293
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.293
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.280
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.276
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.276
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.276
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.276
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.276
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.276
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.276
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.276
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.276
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.257
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CAK80364	TCR/CxC	454	491	NKGCQCKKSGCMKKYCECFQAKVPCSDQCKCIECRNYG

Links
Other TCR/CxC family TFs
Other *Paramecium tetraurelia* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0	I
D915_08967	Fasciola hepatica	D915_08967	I
D915_08968	Fasciola hepatica	D915_08968	I
DILT_0001372901	Diphyllobothrium latum	DILT_0001372901	I
ECANG7_00484	Echinococcus canadensis	ECANG7_00484	N
EmuJ_001029400	Echinococcus multilocularis	EmuJ_001029400	N
RBPJ	Homo sapiens	ENSG00000168214	D
ENSVPAG00000005031	Vicugna pacos	ENSVPAG00000005031	I
GLOINDRAFT_27407	Rhizophagus irregularis	GLOINDRAFT_27407	N
GPLIN_001569000	Globodera pallida	GPLIN_001569000	I
HmN_000214100	Hymenolepis microstoma	HmN_000214100	N
SCUD_0000326701	Schistosoma curassoni	SCUD_0000326701	I
Sjc_0108400	Schistosoma japonicum	Sjc_0108400	I
SMRZ_0000802101	Schistosoma margrebowiei	SMRZ_0000802101	I
SMTD_0001089601	Schistosoma mattheei	SMTD_0001089601	I
SMTD_0001799501	Schistosoma mattheei	SMTD_0001799501	N
SPER_0002728301	Spirometra erinaceieuropaei	SPER_0002728301	N
SPER_0003199901	Spirometra erinaceieuropaei	SPER_0003199901	I
TASK_0000348801	Taenia asiatica	TASK_0000348801	N
tetur11g06371	Tetranychus urticae	tetur11g06371	I
TRE_0000568701	Trichobilharzia regenti	TRE_0000568701	I
TsM_000119200	Taenia solium	TsM_000119200	N

GSPATT00015259001 (Paramecium tetraurelia) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

GSPATT00015259001 **(Paramecium tetraurelia)
TCR/CxC**