MTR_3g110122 (Medicago truncatula)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 MTR_3g110122 T345566_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.824
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.824
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.824
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.824
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.811
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.797
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.676
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.662
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.662
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.649
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.649
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.649
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.649
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.649
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.649
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.635
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.635
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.635
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.622
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.622
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.622
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.622
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.608
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.608
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.595
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.581
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.554
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.541
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH36037 TCR/CxC 147 183
KEH36037 TCR/CxC 232 268

Links

Other TCR/CxC family TFs
Other Medicago truncatula TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_040540 Albugo laibachii ALNC14_040540 N
ALNC14_040550 Albugo laibachii ALNC14_040550 N
ALNC14_040560 Albugo laibachii ALNC14_040560 N
ALNC14_040570 Albugo laibachii ALNC14_040570 N
ALNC14_040580 Albugo laibachii ALNC14_040580 N
ALNC14_040590 Albugo laibachii ALNC14_040590 N
ALNC14_040600 Albugo laibachii ALNC14_040600 N
ALNC14_040610 Albugo laibachii ALNC14_040610 N
ALNC14_040620 Albugo laibachii ALNC14_040620 N
ALNC14_040630 Albugo laibachii ALNC14_040630 N
ALNC14_040640 Albugo laibachii ALNC14_040640 N
ALNC14_040650 Albugo laibachii ALNC14_040650 N
ALNC14_040660 Albugo laibachii ALNC14_040660 N
ALNC14_040670 Albugo laibachii ALNC14_040670 N
ALNC14_040680 Albugo laibachii ALNC14_040680 N
ALNC14_040690 Albugo laibachii ALNC14_040690 N
ALNC14_040700 Albugo laibachii ALNC14_040700 N
ALNC14_040710 Albugo laibachii ALNC14_040710 N
ALNC14_040730 Albugo laibachii ALNC14_040730 N
ALNC14_040740 Albugo laibachii ALNC14_040740 N
ALNC14_040750 Albugo laibachii ALNC14_040750 N
ALNC14_040760 Albugo laibachii ALNC14_040760 N
ALNC14_040770 Albugo laibachii ALNC14_040770 N
ALNC14_040780 Albugo laibachii ALNC14_040780 N
ALNC14_040790 Albugo laibachii ALNC14_040790 N
ALNC14_040800 Albugo laibachii ALNC14_040800 N
ALNC14_040810 Albugo laibachii ALNC14_040810 N
ALNC14_040820 Albugo laibachii ALNC14_040820 N
ALNC14_040830 Albugo laibachii ALNC14_040830 N
ALNC14_040840 Albugo laibachii ALNC14_040840 N
ALNC14_061910 Albugo laibachii ALNC14_061910 N
ALNC14_090760 Albugo laibachii ALNC14_090760 N
ALUE_0000801801 Ascaris lumbricoides ALUE_0000801801 I
ASU_10106 Ascaris suum ASU_10106 I
BN946_scf185014.g98 Trametes cinnabarina BN946_scf185014.g98 I
estExt_fgenesh1_kg.C_10721 Phytophthora capsici estExt_fgenesh1_kg.C_10721 N
estExt_fgenesh1_kg.C_21051 Phytophthora capsici estExt_fgenesh1_kg.C_21051 N
estExt_fgenesh1_pg.C_210371 Phytophthora capsici estExt_fgenesh1_pg.C_210371 N
estExt_fgenesh1_pg.C_230105 Phytophthora capsici estExt_fgenesh1_pg.C_230105 N
estExt_fgenesh1_pm.C_90123 Phytophthora capsici estExt_fgenesh1_pm.C_90123 N
F443_03190 Phytophthora parasitica F443_03190 N
F443_06409 Phytophthora parasitica F443_06409 N
F443_13225 Phytophthora parasitica F443_13225 N
F443_15811 Phytophthora parasitica F443_15811 N
F443_16436 Phytophthora parasitica F443_16436 N
F443_18702 Phytophthora parasitica F443_18702 N
fgenesh-pir_contig_580-abinit-gene-0.31 Pythium irregulare fgenesh-pir_contig_580-abinit-gene-0.31 N
fgenesh-piw_contig_392-abinit-gene-0.52 Pythium iwayamai fgenesh-piw_contig_392-abinit-gene-0.52 N
fgenesh_scip_prom.28083.10919 Phytophthora lateralis fgenesh_scip_prom.28083.10919 N
fgenesh_scip_prom.28083.11749 Phytophthora lateralis fgenesh_scip_prom.28083.11749 N
fgenesh_scip_prom.28083.520 Phytophthora lateralis fgenesh_scip_prom.28083.520 N
fgenesh_scip_prom.46568.1669 Phytophthora kernoviae fgenesh_scip_prom.46568.1669 N
fgenesh_scip_prom.46568.2859 Phytophthora kernoviae fgenesh_scip_prom.46568.2859 N
fgenesh_scip_prom.46568.7094 Phytophthora kernoviae fgenesh_scip_prom.46568.7094 N
fgenesh_scip_prom.46568.8093 Phytophthora kernoviae fgenesh_scip_prom.46568.8093 N
FIBRA_02011 Fibroporia radiculosa FIBRA_02011 I
gw1.2.1743.1 Heterobasidion annosum gw1.2.1743.1 I
HETIRDRAFT_242938 Heterobasidion irregulare HETIRDRAFT_242938 I
HpaG808860 Hyaloperonospora arabidopsidis HpaG808860 N
HpaG810452 Hyaloperonospora arabidopsidis HpaG810452 N
HpaG810973 Hyaloperonospora arabidopsidis HpaG810973 N
HpaG812429 Hyaloperonospora arabidopsidis HpaG812429 N
HpaG812432 Hyaloperonospora arabidopsidis HpaG812432 N
maker-pag1_scaffold_1127-snap-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_1127-snap-gene-0.1 I
maker-pag1_scaffold_183-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_183-snap-gene-0.28 N
maker-pag1_scaffold_287-snap-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_287-snap-gene-0.16 N
maker-pag1_scaffold_438-snap-gene-0.7 Pythium aphanidermatum maker-pag1_scaffold_438-snap-gene-0.7 N
maker-pag1_scaffold_440-fgenesh-gene-0.4 Pythium aphanidermatum maker-pag1_scaffold_440-fgenesh-gene-0.4 N
maker-pag1_scaffold_66-snap-gene-0.49 Pythium aphanidermatum maker-pag1_scaffold_66-snap-gene-0.49 N
maker-par_contig_1213-fgenesh-gene-0.2 Pythium arrhenomanes maker-par_contig_1213-fgenesh-gene-0.2 N
maker-par_contig_2316-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_2316-fgenesh-gene-0.0 N
maker-par_contig_383-fgenesh-gene-0.2 Pythium arrhenomanes maker-par_contig_383-fgenesh-gene-0.2 N
maker-par_contig_654-snap-gene-0.10 Pythium arrhenomanes maker-par_contig_654-snap-gene-0.10 N
maker-pir_contig_2-fgenesh-gene-0.32 Pythium irregulare maker-pir_contig_2-fgenesh-gene-0.32 N
maker-pir_contig_294-snap-gene-0.10 Pythium irregulare maker-pir_contig_294-snap-gene-0.10 N
maker-pir_contig_320-snap-gene-0.13 Pythium irregulare maker-pir_contig_320-snap-gene-0.13 N
maker-pir_contig_551-fgenesh-gene-0.4 Pythium irregulare maker-pir_contig_551-fgenesh-gene-0.4 N
maker-pir_contig_698-fgenesh-gene-0.1 Pythium irregulare maker-pir_contig_698-fgenesh-gene-0.1 N
maker-pir_contig_85-snap-gene-0.26 Pythium irregulare maker-pir_contig_85-snap-gene-0.26 N
maker-piw_contig_207-snap-gene-0.13 Pythium iwayamai maker-piw_contig_207-snap-gene-0.13 N
maker-piw_contig_372-fgenesh-gene-0.4 Pythium iwayamai maker-piw_contig_372-fgenesh-gene-0.4 N
maker-pve_contig_635-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_635-fgenesh-gene-0.0 N
maker-pve_contig_835-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_835-fgenesh-gene-0.1 N
nLs.2.1.2.g08921 Litomosoides sigmodontis nLs.2.1.2.g08921 I
PAXRUDRAFT_162335 Paxillus rubicundulus PAXRUDRAFT_162335 I
Phyra73275 Phytophthora ramorum Phyra73275 N
Phyra76200 Phytophthora ramorum Phyra76200 N
Phyra84925 Phytophthora ramorum Phyra84925 N
Phyra85976 Phytophthora ramorum Phyra85976 N
Physo129725 Phytophthora sojae Physo129725 N
Physo129726 Phytophthora sojae Physo129726 N
Physo130849 Phytophthora sojae Physo130849 N
Physo131272 Phytophthora sojae Physo131272 N
Physo134017 Phytophthora sojae Physo134017 N
Physo134258 Phytophthora sojae Physo134258 N
PITG_03306 Phytophthora infestans PITG_03306 N
PITG_05353 Phytophthora infestans PITG_05353 N
PITG_11760 Phytophthora infestans PITG_11760 N
PITG_14513 Phytophthora infestans PITG_14513 N
PITG_20647 Phytophthora infestans PITG_20647 N
PredSwiss_ASS2010_3259.1 Pneumocystis carinii PredSwiss_ASS2010_3259.1 I
PredSwiss_CON2839.2 Pneumocystis carinii PredSwiss_CON2839.2 I
PredSwiss_EST948.1 Pneumocystis carinii PredSwiss_EST948.1 I
PYU1_G000710 Pythium ultimum PYU1_G000710 N
PYU1_G001667 Pythium ultimum PYU1_G001667 N
PYU1_G003405 Pythium ultimum PYU1_G003405 N
PYU1_G007450 Pythium ultimum PYU1_G007450 N
PYU1_G009787 Pythium ultimum PYU1_G009787 N
PYU1_G013874 Pythium ultimum PYU1_G013874 N
PYU1_G013875 Pythium ultimum PYU1_G013875 N
RHTO_05683 Rhodosporidium toruloides RHTO_05683 N
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I
snap-par_contig_1252-abinit-gene-0.18 Pythium arrhenomanes snap-par_contig_1252-abinit-gene-0.18 I
snap_masked-pve_contig_472-abinit-gene-0.36 Pythium vexans snap_masked-pve_contig_472-abinit-gene-0.36 N
SPRG_00136 Saprolegnia parasitica SPRG_00136 N
SPRG_00586 Saprolegnia parasitica SPRG_00586 N
SPRG_04538 Saprolegnia parasitica SPRG_04538 N
SPRG_06796 Saprolegnia parasitica SPRG_06796 N
SPRG_10710 Saprolegnia parasitica SPRG_10710 N
SPRG_18325 Saprolegnia parasitica SPRG_18325 N
TCNE_0000949901 Toxocara canis TCNE_0000949901 I