CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OBART01G31780 *(Oryza barthii)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	OBART01G31780	T345588_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.933
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.933
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.933
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.933
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.840
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.813
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.693
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.680
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.680
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.680
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.653
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.653
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.653
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.653
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.653
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.653
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.653
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.653
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.653
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.627
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.627
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.627
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.627
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.613
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.613
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.587
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.573
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.560
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OBART01G31780.1	TCR/CxC	111	147	KKCCNCKHSKCLKLYCECFASGVYCDGCNCSNCFNNV
OBART01G31780.1	TCR/CxC	196	233	NKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE

Links
Other TCR/CxC family TFs
Other *Oryza barthii* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB008095	Anopheles albimanus	AALB008095	N
AARA006903	Anopheles arabiensis	AARA006903	N
AATE015739	Anopheles atroparvus	AATE015739	N
ACOM042347	Anopheles coluzzii	ACOM042347	N
ACUA010867	Anopheles culicifacies	ACUA010867	N
ADIR002423	Anopheles dirus	ADIR002423	N
AEPI009840	Anopheles epiroticus	AEPI009840	N
AFAF000552	Anopheles farauti	AFAF000552	N
AFUN001693	Anopheles funestus	AFUN001693	N
AMAM021937	Anopheles maculatus	AMAM021937	N
AMEM011276	Anopheles merus	AMEM011276	N
AMIN003349	Anopheles minimus	AMIN003349	N
ASIS008690	Anopheles sinensis	ASIS008690	N
ASTEI05558	Anopheles stephensi	ASTEI05558	N
CapteG108462	Capitella teleta	CapteG108462	N
Cflo_01889--XP_001120905.1_APIME	Camponotus floridanus	Cflo_01889--XP_001120905.1_APIME	N
CPIJ006335	Culex quinquefasciatus	CPIJ006335	N
CpipJ_CPIJ006335	Culex pipiens	CpipJ_CPIJ006335	N
DAPPUDRAFT_42666	Daphnia pulex	DAPPUDRAFT_42666	N
GD20794	Drosophila simulans	FBgn0192257	N
HelroG128063	Helobdella robusta	HelroG128063	N
HHAL010121-PA	Halyomorpha halys	HHAL010121-PA	N
L798_07377	Zootermopsis nevadensis	L798_07377	N
LotgiG100548	Lottia gigantea	LotgiG100548	N
NEMVEDRAFT_v1g68554	Nematostella vectensis	NEMVEDRAFT_v1g68554	N
PPAI001013	Phlebotomus papatasi	PPAI001013	N

OBART01G31780 (Oryza barthii) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

OBART01G31780 **(Oryza barthii)
TCR/CxC**