Sb10g019660 (Sorghum bicolor)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 Sb10g019660 T345769_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.840
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.840
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.840
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.840
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.813
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.773
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.693
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.667
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.653
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.653
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.653
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.627
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.627
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.627
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.627
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.627
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.627
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.627
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.627
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.613
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.613
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.600
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.600
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.600
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.600
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.587
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.560
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.520
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb10g019660.1 TCR/CxC 70 106
Sb10g019660.1 TCR/CxC 154 191

Links

Other TCR/CxC family TFs
Other Sorghum bicolor TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30170.m014236 Ricinus communis 30170.m014236 I
Aquca_007_00948 Aquilegia coerulea Aquca_007_00948 I
Aquca_015_00272 Aquilegia coerulea Aquca_015_00272 I
Bo6g120460 Brassica oleracea Bo6g120460 I
Bra008259 Brassica rapa Bra008259 I
Bra015750 Brassica rapa Bra015750 I
cassava21054.m1 Manihot esculenta cassava21054.m1 I
cassava21580.m1 Manihot esculenta cassava21580.m1 I
Ca_04804 Cicer arietinum Ca_04804 N
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I
Cla023834 Citrullus lanatus Cla023834 I
Cucsa.272370 Cucumis sativus Cucsa.272370 I
Eucgr.F03588 Eucalyptus grandis Eucgr.F03588 I
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I
gene31474-v1.0-hybrid Fragaria vesca gene31474-v1.0-hybrid I
GLYMA04G01651 Glycine max GLYMA04G01651 N
GLYMA06G01741 Glycine max GLYMA06G01741 N
Gorai.002G113300 Gossypium raimondii Gorai.002G113300 I
Gorai.009G186000 Gossypium raimondii Gorai.009G186000 I
GSMUA_Achr9G20090_001 Musa acuminata GSMUA_Achr9G20090_001 I
Lus10030723.g Linum usitatissimum Lus10030723.g I
mgf018675m Mimulus guttatus mgf018675m I
mgf023466m Mimulus guttatus mgf023466m I
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I
Pm022916 Prunus mume Pm022916 I
POPTR_0002s00730 Populus trichocarpa POPTR_0002s00730 I
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I
PRUPE_ppa022238mg Prunus persica PRUPE_ppa022238mg I
SapurV1A.0016s0340 Salix purpurea SapurV1A.0016s0340 I
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I
TCM_034835 Theobroma cacao TCM_034835 I
Thhalv10019493m.g Eutrema salsugineum Thhalv10019493m.g I
CUC3 Vitis vinifera VIT_18s0122g00800 I