prkrirb (Oryzias latipes)
THAP finger

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05485 (THAP) IPR006612 ENSORLG00000005427 T348586_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
prkrirb
M02540_2.00		 Oryzias latipes
NNBBCCGGNHN
NDNCCGGVVNN		 PBM
Weirauch et al.(2014)
pTH9383		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
prkrirb
M02541_2.00 		Tetraodon nigroviridis
CCCGCGGG
CCCGCGGG		 PBM
Weirauch et al.(2014)
pTH8574 		0.975 0.975
prkrirb
M02536_2.00 		Danio rerio
NNMCMGMSGGNN
NNCCSKCKGKNN		 PBM
Weirauch et al.(2014)
pTH8319 		0.924 0.924
THAP12
M02538_2.00 		Homo sapiens
NNNYMBNNBGRN
NYCVNNVKRNNN		 PBM
Weirauch et al.(2014)
pTH9190 		0.848 0.848
THAP12
M02539_2.00 		Gallus gallus
NBNYCKGKMNNN
NNNKMCMGRNVN		 PBM
Weirauch et al.(2014)
pTH8688 		0.810 0.810
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02540_2.00 THAP finger 4 88

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006835 THAP finger 4 88

Links

Other THAP finger family TFs
Other Oryzias latipes TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G36180 Brachypodium distachyon BRADI1G36180 N 0.000
OPUNC06G18940 Oryza punctata OPUNC06G18940 N 0.000