CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra030273 *(Brassica rapa)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	Bra030273	T352339_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY59 M07382_2.00	Arabidopsis thaliana	NDWWAGTCAAMN	NKTTGACTWWHN	Dap-seq OMalley et al.(2016) WRKY59_col_a	0.879	0.862
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.824	0.500
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.824	0.500
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.824	0.500
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.823	0.483
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.823	0.483
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.823	0.483
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.820	0.500
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.820	0.500
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.820	0.500
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.820	0.500
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.820	0.500
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.819	0.517
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.819	0.517
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.819	0.517
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.818	0.483
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.818	0.483
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.818	0.483
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.811	0.534
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra030273.1-P	WRKY	105	162	DDGFKWRKYGKKPIRGSPFPRHYHKCSNANCIVKKKIERDTSNPDYVLTTYEGRHNHP

Links
Other WRKY family TFs
Other *Brassica rapa* TFs

859 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL003558	Aedes aegypti	AAEL003558	N	0.000
AARA001118	Anopheles arabiensis	AARA001118	N	0.000
AATE005200	Anopheles atroparvus	AATE005200	N	0.000
ACHR008953	Anopheles christyi	ACHR008953	N	0.000
ACOM027781	Anopheles coluzzii	ACOM027781	N	0.000
ALUE_0000523001	Ascaris lumbricoides	ALUE_0000523001	N	0.000
AMAM012119	Anopheles maculatus	AMAM012119	N	0.000
AMEC001472	Anopheles melas	AMEC001472	N	0.000
AMEM006409	Anopheles merus	AMEM006409	N	0.000
ANCCAN_02501	Ancylostoma caninum	ANCCAN_02501	N	0.000
ANCCEY_04498	Ancylostoma ceylanicum	ANCCEY_04498	N	0.000
ANCDUO_01800	Ancylostoma duodenale	ANCDUO_01800	N	0.000
AQUA008305	Anopheles quadriannulatus	AQUA008305	N	0.000
ASIM_0001023101	Anisakis simplex	ASIM_0001023101	N	0.000
augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0	N	0.000
BGLB003107	Biomphalaria glabrata	BGLB003107	N	0.000
Bm12962	Brugia malayi	Bm12962	N	0.000
BTMF_0000819101	Brugia timori	BTMF_0000819101	N	0.000
BXY_0681200	Bursaphelenchus xylophilus	BXY_0681200	N	0.000
CapteG215623	Capitella teleta	CapteG215623	N	0.000
CBG25174	Caenorhabditis briggsae	CBG25174	N	0.000
CBN28364	Caenorhabditis brenneri	CBN28364	N	0.000
CBN28537	Caenorhabditis brenneri	CBN28537	N	0.000
CGOC_0000560601	Cylicostephanus goldi	CGOC_0000560601	N	0.000
CJA30884	Caenorhabditis japonica	CJA30884	N	0.000
CJA40030	Caenorhabditis japonica	CJA40030	N	0.000
CPIJ006385	Culex quinquefasciatus	CPIJ006385	N	0.000
CPIJ018552	Culex quinquefasciatus	CPIJ018552	N	0.000
CpipJ_CPIJ006385	Culex pipiens	CpipJ_CPIJ006385	N	0.000
CpipJ_CPIJ018552	Culex pipiens	CpipJ_CPIJ018552	N	0.000
D918_05751	Trichuris suis	D918_05751	N	0.000
DICVIV_09521	Dictyocaulus viviparus	DICVIV_09521	N	0.000
EEL_0000436501	Elaeophora elaphi	EEL_0000436501	N	0.000
EFV52452	Trichinella spiralis	EFV52452	N	0.000
GM26798	Drosophila sechellia	FBgn0181651	N	0.000
Hba_16068	Heterorhabditis bacteriophora	Hba_16068	N	0.000
HelroG184094	Helobdella robusta	HelroG184094	N	0.000
HPBE_0001925501	Heligmosomoides bakeri	HPBE_0001925501	N	0.000
HPLM_0001120601	Haemonchus placei	HPLM_0001120601	N	0.000
L893_g14196	Steinernema glaseri	L893_g14196	N	0.000
L898_g11712	Steinernema monticolum	L898_g11712	N	0.000
LCUP009926	Lucilia cuprina	LCUP009926	N	0.000
LOAG_18302	Loa loa	LOAG_18302	N	0.000
MDOA007303	Musca domestica	MDOA007303	N	0.000
MESCA003372	Megaselia scalaris	MESCA003372	N	0.000
nAv.1.0.1.g03640	Acanthocheilonema viteae	nAv.1.0.1.g03640	N	0.000
nDi.2.2.2.g01975	Dirofilaria immitis	nDi.2.2.2.g01975	N	0.000
nLs.2.1.2.g02280	Litomosoides sigmodontis	nLs.2.1.2.g02280	N	0.000
nOo.2.0.1.g06917	Onchocerca ochengi	nOo.2.0.1.g06917	N	0.000
nOo.2.0.1.g07994	Onchocerca ochengi	nOo.2.0.1.g07994	N	0.000
OFLC_0001322801	Onchocerca flexuosa	OFLC_0001322801	N	0.000
PEQ_0000886501	Parascaris equorum	PEQ_0000886501	N	0.000
PPA09748	Pristionchus pacificus	PPA09748	N	0.000
RPRC014602	Rhodnius prolixus	RPRC014602	N	0.000
scaffold58-EXSNAP2012.11	Pristionchus exspectatus	scaffold58-EXSNAP2012.11	N	0.000
SVE_1689300	Strongyloides venezuelensis	SVE_1689300	N	0.000
TCLT_0000816701	Thelazia callipaeda	TCLT_0000816701	N	0.000
TCNE_0000027001	Toxocara canis	TCNE_0000027001	N	0.000
TELCIR_13776	Teladorsagia circumcincta	TELCIR_13776	N	0.000
TTRE_0000249801	Trichuris trichiura	TTRE_0000249801	N	0.000
WBGene00237282	Onchocerca volvulus	WBGene00237282	N	0.000
WUBG_04923	Wuchereria bancrofti	WUBG_04923	N	0.000

Bra030273 (Brassica rapa) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

859 Related TFs

Bra030273 **(Brassica rapa)
WRKY**