CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.5478s0006 *(Capsella grandiflora)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	Cagra.5478s0006	T355924_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.892	0.983
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.892	0.983
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.892	0.983
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.892	0.966
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.892	0.966
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.892	0.966
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.883	0.864
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.881	0.864
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.881	0.864
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.881	0.864
WRKY7 M07412_2.00	Arabidopsis thaliana	NNDDDNNNNMAAAGTCAACGV	BCGTTGACTTTKNNNNHHHNN	Dap-seq OMalley et al.(2016) WRKY7_colamp_a	0.873	0.847
WRKY7 M07413_2.00	Arabidopsis thaliana	NAAAAGTCAACKNN	NNMGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY7_col	0.873	0.847
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.865	0.814
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.865	0.814
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.865	0.814
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.856	0.661
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.856	0.661
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.852	0.661
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.852	0.661
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.852	0.661
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.850	0.627
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.850	0.627
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.850	0.627
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.849	0.627
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.849	0.627
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.849	0.627
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.839	0.559
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.839	0.559
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.839	0.559
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.826	0.542
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.826	0.542
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.826	0.525
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.826	0.525
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.826	0.525
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.825	0.610
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.825	0.542
fgenesh1_pg.C_Chr_11.0001000193 M02570_2.00	Ostreococcus tauri	NRGTCARNN	NNYTGACYN	PBM Weirauch et al.(2014) pTH9432	0.823	0.593
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.822	0.525
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.819	0.508
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.819	0.508
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.817	0.525
WRKY50 M07424_2.00	Arabidopsis thaliana	NNAAAAGTCAAMN	NKTTGACTTTTNN	Dap-seq OMalley et al.(2016) WRKY50_col_a	0.811	0.576
WRKY50 M07425_2.00	Arabidopsis thaliana	NWAAGTCAANN	NNTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY50_colamp_a	0.811	0.576
WRKY12 M00898_2.00	Arabidopsis thaliana	NHGGTCAACNN	NNGTTGACCDN	PBM Franco-Zorrilla et al.(2014) WRKY12	0.810	0.525
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cagra.5478s0006.1.p	WRKY	241	299	PDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHN

Links
Other WRKY family TFs
Other *Capsella grandiflora* TFs

1769 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB003620	Anopheles albimanus	AALB003620	N	0.000
AATE015248	Anopheles atroparvus	AATE015248	N	0.000
ACEP14712	Atta cephalotes	ACEP14712	N	0.000
ACYPI007360	Acyrthosiphon pisum	ACYPI007360	N	0.000
ACYPI061631	Acyrthosiphon pisum	ACYPI061631	N	0.000
AFAF019448	Anopheles farauti	AFAF019448	N	0.000
Afo_R004423	Aptenodytes forsteri	Afo_R004423	N	0.000
Afo_R004424	Aptenodytes forsteri	Afo_R004424	N	0.000
AMAM017394	Anopheles maculatus	AMAM017394	N	0.000
AMEM018396	Anopheles merus	AMEM018396	N	0.000
ANCCEY_11186	Ancylostoma ceylanicum	ANCCEY_11186	N	0.000
ANCDUO_22746	Ancylostoma duodenale	ANCDUO_22746	N	0.000
ASTEI04298	Anopheles stephensi	ASTEI04298	N	0.000
BGIBMGA000762	Bombyx mori	BGIBMGA000762	N	0.000
BGLB006195	Biomphalaria glabrata	BGLB006195	N	0.000
Brh_R009090	Buceros rhinoceros	Brh_R009090	N	0.000
Brh_R009091	Buceros rhinoceros	Brh_R009091	N	0.000
CBG11788	Caenorhabditis briggsae	CBG11788	N	0.000
CBG27683	Caenorhabditis briggsae	CBG27683	N	0.000
CGI_10013606	Crassostrea gigas	CGI_10013606	N	0.000
CGOC_0001416801	Cylicostephanus goldi	CGOC_0001416801	N	0.000
CLEC007188	Cimex lectularius	CLEC007188	N	0.000
Cmyd_10006636	Chelonia mydas	Cmyd_10006636	N	0.000
Cmyd_10018206	Chelonia mydas	Cmyd_10018206	N	0.000
D915_09728	Fasciola hepatica	D915_09728	N	0.000
D918_02763	Trichuris suis	D918_02763	N	0.000
DILT_0000246201	Diphyllobothrium latum	DILT_0000246201	N	0.000
DILT_0001226501	Diphyllobothrium latum	DILT_0001226501	I	0.000
ENSECAG00000023678	Equus caballus	ENSECAG00000023678	I	0.000
ENSGMOG00000004079	Gadus morhua	ENSGMOG00000004079	N	0.000
ENSLOCG00000004278	Lepisosteus oculatus	ENSLOCG00000004278	N	0.000
F775_52178	Aegilops tauschii	F775_52178	N	0.000
scro	Drosophila melanogaster	FBgn0028993	D	0.000
Gfo_R001742	Geospiza fortis	Gfo_R001742	N	0.000
Gfo_R001743	Geospiza fortis	Gfo_R001743	N	0.000
GPUH_0000280301	Gongylonema pulchrum	GPUH_0000280301	N	0.000
Hba_18080	Heterorhabditis bacteriophora	Hba_18080	N	0.000
HmN_000453400	Hymenolepis microstoma	HmN_000453400	I	0.000
HmN_000683200	Hymenolepis microstoma	HmN_000683200	N	0.000
HNAJ_0000742201	Hymenolepis nana	HNAJ_0000742201	N	0.000
Hsal_00498--XP_394578.2_APIME	Harpegnathos saltator	Hsal_00498--XP_394578.2_APIME	N	0.000
ISCW011755	Ixodes scapularis	ISCW011755	N	0.000
L892_g18619	Steinernema scapterisci	L892_g18619	N	0.000
MCOS_0000074401	Mesocestoides corti	MCOS_0000074401	N	0.000
MhA1_Contig1149.frz3.gene7	Meloidogyne hapla	MhA1_Contig1149.frz3.gene7	N	0.000
Myotis_brandtii_SLC6A7_10034750	Myotis brandtii	Myotis_brandtii_SLC6A7_10034750	I	0.000
NECAME_06897	Necator americanus	NECAME_06897	N	0.000
nRc.2.0.1.g41491	Romanomermis culicivorax	nRc.2.0.1.g41491	N	0.000
Ogr00063	Ophisaurus gracilis	Ogr00063	I	0.000
Ogr05812	Ophisaurus gracilis	Ogr05812	N	0.000
Ppa-ceh-28	Pristionchus pacificus	PPA19627	N	0.000
PXEA_0000454701	Protopolystoma xenopodis	PXEA_0000454701	N	0.000
PXEA_0002847001	Protopolystoma xenopodis	PXEA_0002847001	N	0.000
scaffold28-EXSNAP2012.55	Pristionchus exspectatus	scaffold28-EXSNAP2012.55	N	0.000
SINV24463	Solenopsis invicta	SINV24463	N	0.000
Sjc_0057900	Schistosoma japonicum	Sjc_0057900	N	0.000
SNAPOd2T00004995001	Oikopleura dioica	SNAPOd2T00004995001	N	0.000
SPER_0002786601	Spirometra erinaceieuropaei	SPER_0002786601	N	0.000
SPER_0003017401	Spirometra erinaceieuropaei	SPER_0003017401	N	0.000
SPU_019656	Strongylocentrotus purpuratus	SPU_019656	N	0.000
SSLN_0001021301	Schistocephalus solidus	SSLN_0001021301	I	0.000
Tal_R010537	Tyto alba	Tal_R010537	N	0.000
nkx2-4	Xenopus tropicalis	XB-GENE-487481	I	0.000
YQE_02582	Dendroctonus ponderosae	YQE_02582	N	0.000

Cagra.5478s0006 (Capsella grandiflora) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1769 Related TFs

Cagra.5478s0006 **(Capsella grandiflora)
WRKY**