CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_Genewise1Plus.C_sca_18_chr2_1_01639
(
Nectria haematococca
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
estExt_Genewise1Plus.C_sca_18_chr2_1_01639
T389959_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
col-22
M01424_2.00
Neurospora crassa
NNNSBCCGGVVN
NBBCCGGVSNNN
PBM
Lambert et al.(2019)
pTH8929
0.638
0.897
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_sca_18_chr2_1_01639
Zinc cluster
34
72
TSCVLCQQRKVRCDKNKPCANCVKAKVECRVIPPQPPRR
Links
Other
Zinc cluster
family TFs
Other
Nectria haematococca
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy