4840_YBR239C (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 4840_YBR239C T390855_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERT1
M00077_2.00 		Saccharomyces cerevisiae
NYCGGAAY
RTTCCGRN		 PBM
Badis et al.(2008)
YBR239C_2158 		0.666 0.974
ERT1
M01572_2.00 		Saccharomyces cerevisiae
NNCGGARNN
NNYTCCGNN		 PBM
Zhu et al.(2009)
Ybr239c 		0.666 0.974
ERT1
M07504_2.00 		Saccharomyces cerevisiae
DYCGGAAY
RTTCCGRH		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0420.1 		0.666 0.974
ERT1
M08646_2.00 		Saccharomyces cerevisiae
DYCGGAAY
RTTCCGRH		 Misc
DeBoer et al.(2011)
YBR239C_564 		0.666 0.974
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
4840_YBR239C Zinc cluster 38 78

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB06G34800 Oryza brachyantha OB06G34800 N
OGLUM06G28430 Oryza glumaepatula OGLUM06G28430 N
ONIVA06G29610 Oryza nivara ONIVA06G29610 N
ORGLA06G0227100 Oryza glaberrima ORGLA06G0227100 N