XP_002493979.1 (Pichia pastoris)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 XP_002493979.1 T392329_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANIA_00689
M11469_2.00 		Aspergillus nidulans Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$FACBALL_Q2 		0.560 0.564
ANIA_00689
M11470_2.00 		Aspergillus nidulans Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$FACBCA_Q2 		0.560 0.564
ANIA_00689
M11471_2.00 		Aspergillus nidulans Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$FACBCB_Q2 		0.560 0.564
CAT8
M00102_2.00 		Saccharomyces cerevisiae
NNNCCGGAN
NTCCGGNNN		 PBM
Badis et al.(2008)
CAT8_4532 		0.548 0.590
CAT8
M07529_2.00 		Saccharomyces cerevisiae
CCGGRN
NYCCGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0280.1 		0.548 0.590
CAT8
M08688_2.00 		Saccharomyces cerevisiae
NCGGNNNDVNGGNN
NNCCNBHNNNCCGN		 Misc
DeBoer et al.(2011)
YMR280C_33 		0.548 0.590
CAT8
M11485_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CAT8_Q6_01 		0.548 0.590
CAT8
M11486_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CAT8_Q6 		0.548 0.590
acu-15
M02616_2.00 		Neurospora crassa
NNCGGVNNNN
NNNNBCCGNN		 PBM
Weirauch et al.(2014)
pTH7801 		0.543 0.538
acu-15
M02617_2.00 		Neurospora crassa
NNCGGVNNNN
NNNNBCCGNN		 PBM
Weirauch et al.(2014)
pTH8900 		0.543 0.538
FGRRES_09921
M02577_2.00 		Fusarium graminearum
NNCGGVNNNN
NNNNBCCGNN		 PBM
Weirauch et al.(2014)
pTH7794 		0.543 0.513
SIP4
M00089_2.00 		Saccharomyces cerevisiae
NNNNNNCSGN
NCSGNNNNNN		 PBM
Badis et al.(2008)
SIP4_2067 		0.542 0.667
SIP4
M01582_2.00 		Saccharomyces cerevisiae
NNNNNNNVVD
HBBNNNNNNN		 PBM
Zhu et al.(2009)
Sip4 		0.542 0.667
SIP4
M07516_2.00 		Saccharomyces cerevisiae
YYCGGRR
YYCCGRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0380.1 		0.542 0.667
SIP4
M08669_2.00 		Saccharomyces cerevisiae
NCGGNYNVMYSGR
YCSRKBNRNCCGN		 Misc
DeBoer et al.(2011)
YJL089W_2067 		0.542 0.667
SIP4
M08670_2.00 		Saccharomyces cerevisiae
YYCGGRR
YYCCGRR		 Misc
DeBoer et al.(2011)
YJL089W_573 		0.542 0.667
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002493979.1 Zinc cluster 25 63

Links

Other Zinc cluster family TFs
Other Pichia pastoris TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CPUR_08234 Claviceps purpurea CPUR_08234 N 0.000
fgenesh1_pg.C_scaffold_9000410 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000410 N 0.000
GLRG_05364 Colletotrichum graminicola GLRG_05364 N 0.000
GLRG_07211 Colletotrichum graminicola GLRG_07211 N 0.000
LEMA_P047880.1 Leptosphaeria maculans LEMA_P047880.1 N 0.000
MANI_026073 Metarhizium anisopliae MANI_026073 N 0.000
OCS_06132 Ophiocordyceps sinensis OCS_06132 N 0.000
S40285_08151 Stachybotrys chlorohalonata S40285_08151 N 0.000
VDBG_02757 Verticillium albo atrum VDBG_02757 N 0.000
VDBG_02757 Verticillium alfalfae VDBG_02757 N 0.000
Z517_03843 Fonsecaea pedrosoi Z517_03843 N 0.000