CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CRF1 *(Arabidopsis thaliana)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	AT4G11140	T000484_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.818	0.840
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.810	0.840
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.798	0.840
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.798	0.840
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.798	0.840
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.774	0.780
ERF069 M01604_2.00	Arabidopsis thaliana	NNGCCGNNN	NNNCGGCNN	PBM Weirauch et al.(2014) pTH7550	0.774	0.820
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.767	0.780
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.732	0.740
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.732	0.740
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.732	0.740
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.721	0.700
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.715	0.720
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.712	0.760
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.710	0.680
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.705	0.700
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.705	0.700
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.705	0.700
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.704	0.700
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.702	0.680
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.702	0.660
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.702	0.660
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.702	0.660
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.702	0.680
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.698	0.680
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.698	0.680
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.697	0.720
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.697	0.600
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.697	0.660
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.697	0.660
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.696	0.680
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.695	0.680
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.693	0.620
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.693	0.620
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.692	0.640
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.692	0.640
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.690	0.700
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.689	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.689	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.689	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.689	0.660
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.689	0.660
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.687	0.680
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.686	0.640
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.685	0.660
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.685	0.660
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.684	0.660
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.683	0.680
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.680	0.660
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.680	0.660
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.680	0.700
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.680	0.700
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.680	0.700
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.677	0.640
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.677	0.640
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.677	0.640
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.677	0.640
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.677	0.640
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT4G11140.1	AP2	85	136	RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGP

Links
Other AP2 family TFs
Other *Arabidopsis thaliana* TFs

1641 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
NAC055	Arabidopsis thaliana	AT3G15500	D
Carubv10014211m.g	Capsella rubella	Carubv10014211m.g	I
Ciclev10008812m.g	Citrus clementina	Ciclev10008812m.g	I
Carubv10009816m.g	Capsella rubella	Carubv10009816m.g	I
Carubv10005353m.g	Capsella rubella	Carubv10005353m.g	I
Cagra.0946s0025	Capsella grandiflora	Cagra.0946s0025	I
Cagra.0570s0027	Capsella grandiflora	Cagra.0570s0027	I
Cagra.0007s0097	Capsella grandiflora	Cagra.0007s0097	I
Bostr.7867s0562	Boechera stricta	Bostr.7867s0562	I
Bostr.28625s0149	Boechera stricta	Bostr.28625s0149	I
Bostr.0124s0082	Boechera stricta	Bostr.0124s0082	I
Aquca_024_00080	Aquilegia coerulea	Aquca_024_00080	I
mgf001766m	Mimulus guttatus	mgf001766m	I
e_gw1.15.275.1	Physcomitrella patens	e_gw1.15.275.1	I
Cucsa.341800	Cucumis sativus	Cucsa.341800	I
Cucsa.074610	Cucumis sativus	Cucsa.074610	I
cassava42313.valid.m1	Manihot esculenta	cassava42313.valid.m1	I
cassava2098.valid.m1	Manihot esculenta	cassava2098.valid.m1	I
28219.m000090	Ricinus communis	28219.m000090	I
SapurV1A.0127s0020	Salix purpurea	SapurV1A.0127s0020	I
LjSGA_036303.1	Lotus japonicus	LjSGA_036303.1	I
chr3.CM0590.390.nd	Lotus japonicus	chr3.CM0590.390.nd	I
PK20135.1	Cannabis sativa	PK20135.1	I
Thhalv10025818m.g	Eutrema salsugineum	Thhalv10025818m.g	I
Thhalv10021174m.g	Eutrema salsugineum	Thhalv10021174m.g	I
Thhalv10011676m.g	Eutrema salsugineum	Thhalv10011676m.g	I
SapurV1A.1471s0010	Salix purpurea	SapurV1A.1471s0010	I
SapurV1A.0864s0080	Salix purpurea	SapurV1A.0864s0080	I
Pm011603	Prunus mume	Pm011603	I
orange1.1g019011m.g	Citrus sinensis	orange1.1g019011m.g	I
MDP0000262032	Malus domestica	MDP0000262032	I
MDP0000132623	Malus domestica	MDP0000132623	I
Gorai.009G433200	Gossypium raimondii	Gorai.009G433200	I
Gorai.002G073700	Gossypium raimondii	Gorai.002G073700	I
gene31149-v1.0-hybrid	Fragaria vesca	gene31149-v1.0-hybrid	I
evm.TU.supercontig_80.93	Carica papaya	evm.TU.supercontig_80.93	I
Eucgr.F01093	Eucalyptus grandis	Eucgr.F01093	I
Bra018998	Brassica rapa	Bra018998	I
GLYMA06G38410	Glycine max	GLYMA06G38410	I
RD26	Arabidopsis lyrata	fgenesh2_kg.7__1491__AT4G27410.3	I
ATNAC3	Arabidopsis lyrata	fgenesh2_kg.3__1697__AT3G15500.1	I
ANAC019	Arabidopsis lyrata	fgenesh2_kg.1__4367__AT1G52890.1	I
Bra027238	Brassica rapa	Bra027238	I
Bra026353	Brassica rapa	Bra026353	I
Bra021113	Brassica rapa	Bra021113	I
Bra019052	Brassica rapa	Bra019052	I
GLYMA12G22880	Glycine max	GLYMA12G22880	I
Bra001596	Brassica rapa	Bra001596	I
Bo7g111390	Brassica oleracea	Bo7g111390	I
Bo6g030940	Brassica oleracea	Bo6g030940	I
Bo5g127040	Brassica oleracea	Bo5g127040	I
Bo3g066850	Brassica oleracea	Bo3g066850	I
Bo1g128450	Brassica oleracea	Bo1g128450	I
Bo1g048300	Brassica oleracea	Bo1g048300	I
RD26	Arabidopsis thaliana	AT4G27410	I
POPTR_0011s12400	Populus trichocarpa	POPTR_0011s12400	I
Cla011949	Citrullus lanatus	Cla011949	I
Ca_21186	Cicer arietinum	Ca_21186	I
VIT_19s0014g03290	Vitis vinifera	VIT_19s0014g03290	I
TCM_031364	Theobroma cacao	TCM_031364	I
Solyc12g013620.1	Solanum lycopersicum	Solyc12g013620.1	I
Solyc07g063410.2	Solanum lycopersicum	Solyc07g063410.2	I
PRUPE_ppa008301mg	Prunus persica	PRUPE_ppa008301mg	I
POPTR_1659s00200	Populus trichocarpa	POPTR_1659s00200	I
Cla023770	Citrullus lanatus	Cla023770	I
POPTR_0001s41460	Populus trichocarpa	POPTR_0001s41460	I
PGSC0003DMG400019294	Solanum tuberosum	PGSC0003DMG400019294	I
PGSC0003DMG400015342	Solanum tuberosum	PGSC0003DMG400015342	I
MTR_8g059170	Medicago truncatula	MTR_8g059170	I
MTR_2g079990	Medicago truncatula	MTR_2g079990	I
GLYMA13G35550	Glycine max	GLYMA13G35550	I
GLYMA12G35000	Glycine max	GLYMA12G35000	I

CRF1 (Arabidopsis thaliana) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1641 Related TFs

CRF1 **(Arabidopsis thaliana)
AP2**