CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MLOC_10221 *(Hordeum vulgare)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	MLOC_10221	T002680_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q6SA75_TOBAC M09733_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_01	0.884	0.886
Q6SA75_TOBAC M09734_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_02	0.884	0.886
ANT M02647_2.00	Arabidopsis thaliana	DNRCACRNWTCCCVADGYNHW	WDNRCHTBGGGAWNYGTGYNH	SELEX Mathelier et al.(2014) MA0571.1	0.869	0.876
ANT M09705_2.00	Arabidopsis thaliana	CACRNWTCCCRAKG	CMTYGGGAWNYGTG	Transfac Matys et al.(2006) P$ANT_01	0.869	0.876
PLT1 M06622_2.00	Arabidopsis thaliana	DDCACGNWWHYCRAGRHNN	NNDYCTYGRDWWNCGTGHH	Dap-seq OMalley et al.(2016) PLT1_col_a	0.853	0.848
PLT1 M06623_2.00	Arabidopsis thaliana	DYDCRNWTYYCRAG	CTYGRRAWNYGHRH	Dap-seq OMalley et al.(2016) PLT1_colamp_a	0.853	0.848
AIL7 M06688_2.00	Arabidopsis thaliana	CRNWTHYCRAG	CTYGRDAWNYG	Dap-seq OMalley et al.(2016) AIL7_col_a	0.804	0.829
AIL7 M06689_2.00	Arabidopsis thaliana	DCRNWTHYCRAG	CTYGRDAWNYGH	Dap-seq OMalley et al.(2016) AIL7_colamp_a	0.804	0.829
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MLOC_10221.1	AP2	287	347	SQYRGVTRHRWTGRYEAHLWDNSCKKDGQTRKGRQVYLGGYDNEDKAARAYDLAALKYWGP
MLOC_10221.1	AP2	389	441	SIYRGVTRHHQHGKWQARIGRVAGNKDLYLGTFTTQEEAAEAYDVAAIKFRGL
MLOC_10221.2	AP2	287	348	SQYRGVTSRHRWTGRYEAHLWDNSCKKDGQTRKGRQVYLGGYDNEDKAARAYDLAALKYWGP
MLOC_10221.2	AP2	390	442	SIYRGVTRHHQHGKWQARIGRVAGNKDLYLGTFTTQEEAAEAYDVAAIKFRGL
MLOC_10221.3	AP2	287	320	SQYRGVTRHRWTGRYEAHLWDNSCKKDGQTRKGR
MLOC_10221.4	AP2	25	77	SIYRGVTRHHQHGKWQARIGRVAGNKDLYLGTFTTQEEAAEAYDVAAIKFRGL

Links
Other AP2 family TFs
Other *Hordeum vulgare* TFs

583 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
K443DRAFT_676538	Laccaria amethystina	K443DRAFT_676538	N	0.000
LACBIDRAFT_327759	Laccaria bicolor	LACBIDRAFT_327759	N	0.000