CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MTR_4g086190 *(Medicago truncatula)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	MTR_4g086190	T002859_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.820	0.900
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.764	0.880
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.764	0.880
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.762	0.800
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.762	0.800
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.762	0.800
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.756	0.760
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.755	0.760
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.746	0.800
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.746	0.800
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.746	0.800
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.740	0.780
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.721	0.720
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.711	0.820
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.711	0.820
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.711	0.820
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.711	0.820
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.707	0.760
ERF069 M01604_2.00	Arabidopsis thaliana	NNGCCGNNN	NNNCGGCNN	PBM Weirauch et al.(2014) pTH7550	0.707	0.780
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.702	0.760
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.702	0.760
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.702	0.800
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.702	0.800
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.702	0.800
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.701	0.740
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.701	0.720
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.701	0.720
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.699	0.720
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.699	0.720
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.699	0.720
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.698	0.740
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.697	0.720
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.697	0.720
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.696	0.720
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.695	0.740
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.692	0.740
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.692	0.740
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.692	0.740
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.692	0.720
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.692	0.720
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.690	0.720
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.689	0.720
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.689	0.720
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.687	0.700
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.686	0.720
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.685	0.740
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AES90177	AP2	94	145	KKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGP

Links
Other AP2 family TFs
Other *Medicago truncatula* TFs

1409 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ANIA_00928	Aspergillus nidulans	CADANIAG00001727	D
PDIP_65580	Penicillium digitatum	PDIP_65580	I
PV07_01284	Cladophialophora immunda	PV07_01284	I
PV06_02457	Exophiala oligosperma	PV06_02457	I
PV04_08584	Capronia semiimmersa	PV04_08584	I
PTT_02242	Pyrenophora teres	PTT_02242	I
PTRG_10554	Pyrenophora triticirepentis	PTRG_10554	I
PITC_097670	Penicillium italicum	PITC_097670	I
PEX1_005990	Penicillium expansum	PEX1_005990	I
PV09_08665	Verruconis gallopava	PV09_08665	I
PDE_00510	Penicillium oxalicum	PDE_00510	I
PCH_Pc16g14610	Penicillium rubens	PCH_Pc16g14610	I
PABG_06059	Paracoccidioides brasiliensis	PABG_06059	I
PAAG_05307	Paracoccidioides sp lutzii	PAAG_05307	I
Mycgr3G68239	Zymoseptoria tritici	Mycgr3G68239	I
MYCFIDRAFT_210457	Pseudocercospora fijiensis	MYCFIDRAFT_210457	I
MPH_10551	Macrophomina phaseolina	MPH_10551	I
MCYG_00067	Arthroderma otae	MCYG_00067	I
SEPMUDRAFT_123488	Sphaerulina musiva	SEPMUDRAFT_123488	I
SETTUDRAFT_32470	Setosphaeria turcica	SETTUDRAFT_32470	I
SNOG_02470	Phaeosphaeria nodorum	SNOG_02470	I
TESG_03220	Trichophyton tonsurans	TESG_03220	I
U727_00430440431	Penicillium solitum	U727_00430440431	I
UCRNP2_1469	Neofusicoccum parvum	UCRNP2_1469	I
UREG_02875	Uncinocarpus reesii	UREG_02875	I
W97_01407	Coniosporium apollinis	W97_01407	I
estExt_Genewise1Plus.C_140773	Mycosphaerella fijiensis	estExt_Genewise1Plus.C_140773	I
estExt_Genewise1Plus.C_80383	Cochliobolus heterostrophus C5	estExt_Genewise1Plus.C_80383	I
estExt_Genewise1Plus.C_chr_20926	Mycosphaerella graminicola	estExt_Genewise1Plus.C_chr_20926	I
AB05299.1	Alternaria brassicicola	AB05299.1	I
fgenesh1_pm.00042_#_359	Aspergillus carbonarius	fgenesh1_pm.00042_#_359	I
Pc16g14610	Penicillium chrysogenum	Pc16g14610	I
COCVIDRAFT_14051	Bipolaris victoriae	COCVIDRAFT_14051	I
MCYG_00067	Microsporum canis	MCYG_00067	I
SNOG_02470	Stagonospora nodorum	SNOG_02470	I
A1O1_02181	Capronia coronata	A1O1_02181	I
A1O5_08472	Cladophialophora psammophila	A1O5_08472	I
A1O7_08064	Cladophialophora yegresii	A1O7_08064	I
AOL_s00097g406	Arthrobotrys oligospora	AOL_s00097g406	I
AUEXF2481DRAFT_6834	Aureobasidium subglaciale	AUEXF2481DRAFT_6834	I
BAUCODRAFT_78015	Baudoinia compniacensis	BAUCODRAFT_78015	I
CADAFLAG00001126	Aspergillus flavus	CADAFLAG00001126	I
CADANGAG00001424	Aspergillus niger	CADANGAG00001424	I
ATEG_05199	Aspergillus terreus	CADATEAG00005112	I
COCC4DRAFT_176529	Bipolaris maydis	COCC4DRAFT_176529	I
COCCADRAFT_31801	Bipolaris zeicola	COCCADRAFT_31801	I
COCMIDRAFT_84450	Bipolaris oryzae	COCMIDRAFT_84450	I
COCSADRAFT_266185	Bipolaris sorokiniana	COCSADRAFT_266185	I
MGYG_07139	Microsporum gypseum	MGYG_07139	I
CPC735_010610	Coccidioides posadasii	CPC735_010610	I
DOTSEDRAFT_69884	Dothistroma septosporum	DOTSEDRAFT_69884	I
G647_07030	Cladophialophora carrionii	G647_07030	I
GSTUM_00002996001	Tuber melanosporum	GSTUM_00002996001	I
H072_4801	Dactylellina haptotyla	H072_4801	I
H101_06251	Trichophyton interdigitale	H101_06251	I
H102_00463	Trichophyton rubrum	H102_00463	I
H105_00452	Trichophyton soudanense	H105_00452	I
HCBG_01324	Histoplasma capsulatum	HCBG_01324	I
HMPREF1120_02532	Exophiala dermatitidis	HMPREF1120_02532	I
LEMA_P088770.1	Leptosphaeria maculans	LEMA_P088770.1	I
M437DRAFT_69925	Aureobasidium melanogenum	M437DRAFT_69925	I
M438DRAFT_354976	Aureobasidium pullulans	M438DRAFT_354976	I
CIMG_03081	Coccidioides immitis	CIMG_03081	I

MTR_4g086190 (Medicago truncatula) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1409 Related TFs

MTR_4g086190 **(Medicago truncatula)
AP2**