OBART03G35620 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART03G35620 T003107_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.851 0.837
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.851 0.837
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.850 0.846
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.850 0.846
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.824 0.808
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.824 0.808
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.772 0.779
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.772 0.779
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G35620.1 AP2 303 360
OBART03G35620.1 AP2 402 454

Links

Other AP2 family TFs
Other Oryza barthii TFs

564 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
da Drosophila melanogaster FBgn0000413 D
ACUA015759 Anopheles culicifacies ACUA015759 I
TC009743 Tribolium castaneum TC009743 I
YQE_12444 Dendroctonus ponderosae YQE_12444 I
Cflo_06641--XP_394032.3_APIME Camponotus floridanus Cflo_06641--XP_394032.3_APIME I
Hsal_01424--XP_394032.3_APIME Harpegnathos saltator Hsal_01424--XP_394032.3_APIME I
CLEC011986 Cimex lectularius CLEC011986 I
LCUP014805 Lucilia cuprina LCUP014805 I
LCUP015675 Lucilia cuprina LCUP015675 I
LDEC016095 Leptinotarsa decemlineata LDEC016095 I
AALB001175 Anopheles albimanus AALB001175 I
AARA010786 Anopheles arabiensis AARA010786 I
AATE001337 Anopheles atroparvus AATE001337 I
ACOM039284 Anopheles coluzzii ACOM039284 I
SINV15659 Solenopsis invicta SINV15659 I
ADIR011358 Anopheles dirus ADIR011358 I
AEPI010093 Anopheles epiroticus AEPI010093 I
AFUN010901 Anopheles funestus AFUN010901 I
AMAM016616 Anopheles maculatus AMAM016616 I
AMEC022127 Anopheles melas AMEC022127 I
AMEM007225 Anopheles merus AMEM007225 I
AMIN007190 Anopheles minimus AMIN007190 I
AQUA004188 Anopheles quadriannulatus AQUA004188 I
ASTEI05038 Anopheles stephensi ASTEI05038 I
LLOJ002325 Lutzomyia longipalpis LLOJ002325 I
MDOA011656 Musca domestica MDOA011656 I
GH13857 Drosophila grimshawi FBgn0121333 I
AAEL010226 Aedes aegypti AAEL010226 I
ACEP22357 Atta cephalotes ACEP22357 I
ACYPI003796 Acyrthosiphon pisum ACYPI003796 I
ADAC004782 Anopheles darlingi ADAC004782 I
AGAP008814 Anopheles gambiae AGAP008814 I
BGIBMGA003285 Bombyx mori BGIBMGA003285 I
CPIJ006828 Culex quinquefasciatus CPIJ006828 I
DAPPUDRAFT_299735 Daphnia pulex DAPPUDRAFT_299735 I
GA18660 Drosophila pseudoobscura FBgn0078660 I
GF15779 Drosophila ananassae FBgn0092803 I
GG10122 Drosophila erecta FBgn0102433 I
CpipJ_CPIJ006828 Culex pipiens CpipJ_CPIJ006828 I
GI19105 Drosophila mojavensis FBgn0141844 I
GM18305 Drosophila sechellia FBgn0173212 I
GJ15409 Drosophila virilis FBgn0202603 I
GK12476 Drosophila willistoni FBgn0214486 I
GE18936 Drosophila yakuba FBgn0236308 I
GB41727 Apis mellifera GB41727 I
KGM_13328 Danaus plexippus KGM_13328 I
L798_13597 Zootermopsis nevadensis L798_13597 I
MESCA003205 Megaselia scalaris MESCA003205 I
NV16928 Nasonia vitripennis NV16928 I
PHUM374400 Pediculus humanus PHUM374400 I