ORGLA05G0109500 (Oryza glaberrima)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 ORGLA05G0109500 T003902_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
abi4
M02648_2.00 		Zea mays
CGSYGCYBYB
VRVRGCRSCG		 SELEX
Mathelier et al.(2014)
MA0123.1 		0.819 1.000
abi4
M09706_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABI4_01 		0.819 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA05G0109500.1 AP2 48 99

Links

Other AP2 family TFs
Other Oryza glaberrima TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
abi4 Zea mays GRMZM2G093595 D 0.819
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I 0.793
TCM_042471 Theobroma cacao TCM_042471 I 0.793
ABI4 Vitis vinifera VIT_13s0067g01400 I 0.784
Ca_12465 Cicer arietinum Ca_12465 I 0.790
Cla006708 Citrullus lanatus Cla006708 I 0.783
Pm018953 Prunus mume Pm018953 I 0.793
29814.m000739 Ricinus communis 29814.m000739 I 0.793
cassava20838.m1 Manihot esculenta cassava20838.m1 I 0.783
cassava41265.m1 Manihot esculenta cassava41265.m1 I 0.793
mgf024416m Mimulus guttatus mgf024416m I 0.792
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I 0.782
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I 0.782
Carubv10025253m.g Capsella rubella Carubv10025253m.g I 0.782
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I 0.793
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.745
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I 0.717
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.731
Lus10009834.g Linum usitatissimum Lus10009834.g I 0.790
Lus10040944.g Linum usitatissimum Lus10040944.g I 0.790
MDP0000225376 Malus domestica MDP0000225376 I 0.793
MDP0000628484 Malus domestica MDP0000628484 I 0.783
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I 0.793
Pavir.J29572 Panicum virgatum Pavir.J29572 I 0.819
Pavir.J33237 Panicum virgatum Pavir.J33237 I 0.819
Pavir.J38620 Panicum virgatum Pavir.J38620 I 0.819
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I 0.793
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I 0.780
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I 0.785
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I 0.783
LPERR05G10140 Leersia perrieri LPERR05G10140 I 0.819
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.721
ABI4 Arabidopsis thaliana AT2G40220 I 0.782
BGIOSGA018232 Oryza indica BGIOSGA018232 I 0.819
Bo3g034810 Brassica oleracea Bo3g034810 I 0.785
Bo4g025410 Brassica oleracea Bo4g025410 I 0.785
Bo8g092010 Brassica oleracea Bo8g092010 I 0.679
Bra000178 Brassica rapa Bra000178 I 0.785
Bra004978 Brassica rapa Bra004978 I 0.785
Bra007341 Brassica rapa Bra007341 I 0.679
GLYMA02G43240 Glycine max GLYMA02G43240 I 0.793
GLYMA14G06290 Glycine max GLYMA14G06290 I 0.793
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I 0.792
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I 0.794
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I 0.792
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I 0.717
MTR_5g082950 Medicago truncatula MTR_5g082950 I 0.779
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I 0.819
OMERI05G11540 Oryza meridionalis OMERI05G11540 I 0.819
ONIVA05G13490 Oryza nivara ONIVA05G13490 I 0.819
OPUNC05G11000 Oryza punctata OPUNC05G11000 I 0.819
ABI4 Oryza sativa OS05G0351200 I 0.819
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I 0.793
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I 0.793
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I 0.793
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I 0.787
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I 0.793
Sb09g016550 Sorghum bicolor Sb09g016550 I 0.819
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I 0.782