CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ORUFI04G22230 *(Oryza rufipogon)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	ORUFI04G22230	T004025_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.833	0.959
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.833	0.959
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.816	0.939
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.816	0.939
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.816	0.939
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.793	0.898
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.776	0.939
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.748	0.796
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.738	0.837
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.732	0.837
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.732	0.837
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.732	0.837
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.729	0.776
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.727	0.816
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.727	0.776
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.726	0.776
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.726	0.776
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.726	0.776
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.718	0.796
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.718	0.796
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.718	0.796
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.718	0.776
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.718	0.776
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.718	0.776
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.708	0.673
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.704	0.755
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.704	0.755
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.703	0.755
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.703	0.755
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.703	0.755
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.701	0.694
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.700	0.816
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.696	0.755
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.696	0.755
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.696	0.735
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.696	0.735
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.696	0.735
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.695	0.755
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.690	0.714
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.688	0.735
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.687	0.673
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.687	0.673
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.685	0.694
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.684	0.816
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.684	0.816
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.684	0.816
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.684	0.816
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.684	0.816
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.683	0.735
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.678	0.776
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ORUFI04G22230.1	AP2	150	202	KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDTAEDAALAYDRAAYRMRGS

Links
Other AP2 family TFs
Other *Oryza rufipogon* TFs

1486 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACHR006959	Anopheles christyi	ACHR006959	N
TC000275	Tribolium castaneum	TC000275	N
tetur43g00160	Tetranychus urticae	tetur43g00160	N
YQE_10681	Dendroctonus ponderosae	YQE_10681	N
Hsal_14938--XP_397095.2_APIME	Harpegnathos saltator	Hsal_14938--XP_397095.2_APIME	N
estExt_fgenesh2_pg.C_4800031	Branchiostoma floridae	estExt_fgenesh2_pg.C_4800031	N
fgenesh2_pg.scaffold_447000002	Branchiostoma floridae	fgenesh2_pg.scaffold_447000002	N
Ocbimv22031434m.g	Octopus bimaculoides	Ocbimv22031434m.g	N
Sakowv30041832m.g	Saccoglossus kowalevskii	Sakowv30041832m.g	N
HHAL003878-PA	Halyomorpha halys	HHAL003878-PA	N
LDEC013255	Leptinotarsa decemlineata	LDEC013255	N
AALB007121	Anopheles albimanus	AALB007121	N
AARA010071	Anopheles arabiensis	AARA010071	N
AATE016879	Anopheles atroparvus	AATE016879	N
SMAR013202	Strigamia maritima	SMAR013202	N
ACOM034973	Anopheles coluzzii	ACOM034973	N
ADIR002890	Anopheles dirus	ADIR002890	N
AEPI007432	Anopheles epiroticus	AEPI007432	N
AFAF018426	Anopheles farauti	AFAF018426	N
AFUN001494	Anopheles funestus	AFUN001494	N
AMEC020789	Anopheles melas	AMEC020789	N
AMEM010172	Anopheles merus	AMEM010172	N
AMIN002970	Anopheles minimus	AMIN002970	N
AQUA001486	Anopheles quadriannulatus	AQUA001486	N
ASTEI00671	Anopheles stephensi	ASTEI00671	N
LLOJ008588	Lutzomyia longipalpis	LLOJ008588	N
PPAI007084	Phlebotomus papatasi	PPAI007084	N
GM23477	Drosophila sechellia	FBgn0178344	N
AAEL009171	Aedes aegypti	AAEL009171	N
ACEP24968	Atta cephalotes	ACEP24968	N
ACYPI008922	Acyrthosiphon pisum	ACYPI008922	N
ADAC008608	Anopheles darlingi	ADAC008608	N
AGAP003726	Anopheles gambiae	AGAP003726	N
BGIBMGA011510	Bombyx mori	BGIBMGA011510	N
CapteG195496	Capitella teleta	CapteG195496	N
CGI_10009013	Crassostrea gigas	CGI_10009013	N
CPIJ001396	Culex quinquefasciatus	CPIJ001396	N
DAPPUDRAFT_191081	Daphnia pulex	DAPPUDRAFT_191081	N
CG13624	Drosophila melanogaster	FBgn0039209	N
GG12336	Drosophila erecta	FBgn0104626	N
CpipJ_CPIJ001396	Culex pipiens	CpipJ_CPIJ001396	N
GD18285	Drosophila simulans	FBgn0189818	N
GJ23851	Drosophila virilis	FBgn0210946	N
GK14305	Drosophila willistoni	FBgn0216311	N
GB44555	Apis mellifera	GB44555	N
HMEL006500	Heliconius melpomene	HMEL006500	N
ISCW005126	Ixodes scapularis	ISCW005126	N
LotgiG231402	Lottia gigantea	LotgiG231402	N
MCINX002154	Melitaea cinxia	MCINX002154	N
NEMVEDRAFT_v1g238168	Nematostella vectensis	NEMVEDRAFT_v1g238168	N
NV18305	Nasonia vitripennis	NV18305	N
PHUM239100	Pediculus humanus	PHUM239100	N
RPRC005655	Rhodnius prolixus	RPRC005655	N

ORUFI04G22230 (Oryza rufipogon) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1486 Related TFs

ORUFI04G22230 **(Oryza rufipogon)
AP2**