CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PGSC0003DMG400004826
(
Solanum tuberosum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
PGSC0003DMG400004826
T004354_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.708
0.840
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.708
0.840
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.708
0.840
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.704
0.860
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.704
0.860
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.702
0.840
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.702
0.840
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.700
0.840
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.700
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400012317
AP2
58
109
PIYHGVRKRSWGKWVSEIREPRKKSRIWLGTFSTAEMAARAHDVAAIAIKGD
Links
Other
AP2
family TFs
Other
Solanum tuberosum
TFs
267 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Hsal_17691--NA
Harpegnathos saltator
Hsal_17691--NA
N
SVUK_0001259001
Strongylus vulgaris
SVUK_0001259001
N