Pm000479 (Prunus mume)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pm000479 T006547_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.883 0.865
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.883 0.865
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.852 0.846
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.852 0.846
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.838 0.827
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.838 0.827
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.824 0.837
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.824 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm000479 AP2 169 226
Pm000479 AP2 268 320

Links

Other AP2 family TFs
Other Prunus mume TFs

526 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CLUG_04645 Candida lusitaniae CLUG_04645 N
CPAG_03938 Candida parapsilosis CPAG_03938 N
PGUG_00224 Candida guilliermondii PGUG_00224 N
CANTEDRAFT_114861 Candida tenuis CANTEDRAFT_114861 N
CaO19.7068 Candida albicans CaO19.7068 N
CD36_70140 Candida dubliniensis CD36_70140 N
CLUG_04645 Clavispora lusitaniae CLUG_04645 N
CORT_0H01500 Candida orthopsilosis CORT_0H01500 N
CTRG_04907 Candida tropicalis CTRG_04907 N
DEHA2A03630g Debaryomyces hansenii DEHA2A03630g N
G210_2290 Candida maltosa G210_2290 N
GNLVRS01_PISO0I05640g Millerozyma farinosa GNLVRS01_PISO0I05640g N
GNLVRS01_PISO0J07445g Millerozyma farinosa GNLVRS01_PISO0J07445g N
LELG_05523 Lodderomyces elongisporus LELG_05523 N
PGUG_00224 Meyerozyma guilliermondii PGUG_00224 N
PICST_67944 Scheffersomyces stipitis PICST_67944 N