CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.126880 *(Cucumis sativus)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Cucsa.126880	T007027_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.850	0.880
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.850	0.880
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.843	0.880
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.843	0.900
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.843	0.900
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.816	0.860
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.816	0.860
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.816	0.860
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.781	0.820
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.781	0.820
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.781	0.820
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.740	0.780
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.740	0.780
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.737	0.720
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.736	0.800
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.736	0.800
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.736	0.800
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.736	0.740
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.735	0.760
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.735	0.760
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.735	0.760
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.726	0.740
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.722	0.740
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.717	0.740
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.717	0.740
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.717	0.740
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.715	0.740
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.715	0.740
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.715	0.740
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.713	0.720
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.713	0.720
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.713	0.720
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.709	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.708	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.708	0.680
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.703	0.700
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.703	0.680
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.703	0.680
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.701	0.700
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.700	0.700
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.699	0.660
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.697	0.680
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.696	0.680
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.696	0.680
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.695	0.720
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.693	0.700
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.693	0.700
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.693	0.700
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.692	0.700
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.691	0.700
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.690	0.700
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.690	0.700
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.689	0.660
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.688	0.700
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.688	0.700
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.688	0.700
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.686	0.720
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.685	0.660
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.685	0.660
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.685	0.680
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.679	0.640
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.126880.1	AP2	1	52	VHFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTAEEAARAYDAAARKFRGA

Links
Other AP2 family TFs
Other *Cucumis sativus* TFs

1789 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ztf-11	Caenorhabditis elegans	WBGene00009939	D
ACOC_0000924001	Angiostrongylus costaricensis	ACOC_0000924001	I
Hba_17025	Heterorhabditis bacteriophora	Hba_17025	I
EVEC_0001307101	Enterobius vermicularis	EVEC_0001307101	I
DICVIV_01967	Dictyocaulus viviparus	DICVIV_01967	I
BXY_0842900	Bursaphelenchus xylophilus	BXY_0842900	I
ASU_06642	Ascaris suum	ASU_06642	I
ANCDUO_13968	Ancylostoma duodenale	ANCDUO_13968	I
ANCCEY_04739	Ancylostoma ceylanicum	ANCCEY_04739	I
L596_g1281	Steinernema carpocapsae	L596_g1281	I
ACAC_0000050701	Angiostrongylus cantonensis	ACAC_0000050701	I
AMAM009924	Anopheles maculatus	AMAM009924	I
AMAM003778	Anopheles maculatus	AMAM003778	I
AFAF020264	Anopheles farauti	AFAF020264	I
AFAF001557	Anopheles farauti	AFAF001557	I
ACOM027979	Anopheles coluzzii	ACOM027979	I
AATE018011	Anopheles atroparvus	AATE018011	I
PTRK_0001788400	Parastrongyloides trichosuri	PTRK_0001788400	I
TELCIR_26151	Teladorsagia circumcincta	TELCIR_26151	I
TELCIR_22038	Teladorsagia circumcincta	TELCIR_22038	I
SVE_1952800	Strongyloides venezuelensis	SVE_1952800	I
SSTP_0000574400	Strongyloides stercoralis	SSTP_0000574400	I
SPAL_0000892700	Strongyloides papillosus	SPAL_0000892700	I
SPAL_0000489100	Strongyloides papillosus	SPAL_0000489100	I
SMUV_0000666101	Syphacia muris	SMUV_0000666101	I
RSKR_0000214800	Rhabditophanes kr3021	RSKR_0000214800	I
AATE000335	Anopheles atroparvus	AATE000335	I
OESDEN_24201	Oesophagostomum dentatum	OESDEN_24201	I
nLs.2.1.2.g09672	Litomosoides sigmodontis	nLs.2.1.2.g09672	I
NECAME_10938	Necator americanus	NECAME_10938	I
nDi.2.2.2.g06992	Dirofilaria immitis	nDi.2.2.2.g06992	I
NBR_0001165301	Nippostrongylus brasiliensis	NBR_0001165301	I
L893_g1446	Steinernema glaseri	L893_g1446	I
L889_g28085	Steinernema feltiae	L889_g28085	I
GI16394	Drosophila mojavensis	FBgn0139142	I
ACYPI31510	Acyrthosiphon pisum	ACYPI31510	I
ACYPI31512	Acyrthosiphon pisum	ACYPI31512	I
CapteG130298	Capitella teleta	CapteG130298	I
CBG03854	Caenorhabditis briggsae	CBG03854	I
CBN09920	Caenorhabditis brenneri	CBN09920	I
CBN18838	Caenorhabditis brenneri	CBN18838	I
CJA03417	Caenorhabditis japonica	CJA03417	I
CRE08084	Caenorhabditis remanei	CRE08084	I
ENSAMEG00000015014	Ailuropoda melanoleuca	ENSAMEG00000015014	I
ENSBTAG00000003540	Bos taurus	ENSBTAG00000003540	I
ST18	Homo sapiens	ENSG00000147488	I
MYT1L	Homo sapiens	ENSG00000186487	I
ENSLACG00000008399	Latimeria chalumnae	ENSLACG00000008399	I
MYT1L	Macaca mulatta	ENSMMUG00000009310	I
ENSTGUG00000014218	Taeniopygia guttata	ENSTGUG00000014218	I
ACEP14857	Atta cephalotes	ACEP14857	I
GL14771	Drosophila persimilis	FBgn0152375	I
CG43689	Drosophila melanogaster	FBgn0263772	I
HelroG85268	Helobdella robusta	HelroG85268	I
ISCW018799	Ixodes scapularis	ISCW018799	I
WBGene00238210	Onchocerca volvulus	WBGene00238210	I
YQE_11977	Dendroctonus ponderosae	YQE_11977	I
Cmyd_10014184	Chelonia mydas	Cmyd_10014184	I
Ocbimv22028295m.g	Octopus bimaculoides	Ocbimv22028295m.g	I
HHAL001110-PA	Halyomorpha halys	HHAL001110-PA	I
LCUP002242	Lucilia cuprina	LCUP002242	I
SMU15028607	Schmidtea mediterranea	SMU15028607	I
Minc05804	Meloidogyne incognita	Minc05804	I
Smp_168610	Schistosoma mansoni	Smp_168610	N
Ocbimv22028296m.g	Octopus bimaculoides	Ocbimv22028296m.g	N
SMU15021651	Schmidtea mediterranea	SMU15021651	N

Cucsa.126880 (Cucumis sativus) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1789 Related TFs

Cucsa.126880 **(Cucumis sativus)
AP2**