CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10010105m.g *(Capsella rubella)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Carubv10010105m.g	T007848_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.809	0.962
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.776	0.750
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.776	0.750
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.776	0.750
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.772	0.712
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.772	0.712
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.767	0.827
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.767	0.827
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.767	0.827
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.764	0.788
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.760	0.731
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.752	0.750
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.752	0.750
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.752	0.750
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.749	0.769
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.743	0.769
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.743	0.769
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.743	0.769
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.743	0.769
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.743	0.769
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.733	0.750
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.733	0.750
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.732	0.769
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.730	0.673
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.730	0.673
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.720	0.712
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.720	0.712
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.720	0.712
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.718	0.692
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.715	0.673
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.711	0.654
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.703	0.635
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.699	0.673
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.694	0.692
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.694	0.692
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.694	0.654
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.693	0.654
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.693	0.577
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.691	0.692
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.691	0.692
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.691	0.654
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.690	0.654
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.689	0.596
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.688	0.692
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.688	0.692
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.688	0.692
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.687	0.692
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.686	0.635
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.686	0.635
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.686	0.654
OS05G0497200 M01636_2.00	Oryza sativa	CGSCGCCR	YGGCGSCG	PBM Weirauch et al.(2014) pTH8640	0.684	0.654
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.683	0.692
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.682	0.615
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.679	0.673
P93392_TOBAC M09731_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$OPBP1_01	0.679	0.712
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.679	0.673
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.679	0.673
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.678	0.712
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.678	0.712
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.678	0.692
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10010105m	AP2	85	137	KSYRGVRKRPWGKYAAEIRDSTRKGIRVWLGTFDTAEEAALAYDQAAFALKGS

Links
Other AP2 family TFs
Other *Capsella rubella* TFs

1851 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Bhlha15	Mus musculus	ENSMUSG00000052271	D
BHLHA15	Homo sapiens	ENSG00000180535	D
Afo_R012275	Aptenodytes forsteri	Afo_R012275	I
ENSPFOG00000013242	Poecilia formosa	ENSPFOG00000013242	I
ENSPPYG00000017361	Pongo abelii	ENSPPYG00000017361	I
ENSPSIG00000001236	Pelodiscus sinensis	ENSPSIG00000001236	I
BHLHA15	Pan troglodytes	ENSPTRG00000019434	I
Bhlha15	Rattus norvegicus	ENSRNOG00000025164	I
ENSSHAG00000015620	Sarcophilus harrisii	ENSSHAG00000015620	I
ENSSTOG00000009728	Ictidomys tridecemlineatus	ENSSTOG00000009728	I
bhlha15	Tetraodon nigroviridis	ENSTNIG00000012887	I
bhlha15	Takifugu rubripes	ENSTRUG00000016815	I
BHLHA15	Tursiops truncatus	ENSTTRG00000015701	I
ENSXMAG00000014837	Xiphophorus maculatus	ENSXMAG00000014837	I
Aan_R003120	Calypte anna	Aan_R003120	I
bhlha15	Oryzias latipes	ENSORLG00000003401	I
Alligator_sinensis_CCG022066.1	Alligator sinensis	Alligator_sinensis_CCG022066.1	I
Brh_R005630	Buceros rhinoceros	Brh_R005630	I
Cmyd_10012423	Chelonia mydas	Cmyd_10012423	I
ENSP00000326391-D1	Bos grunniens	ENSP00000326391-D1	I
ENSP00000326391	Macaca fascicularis	ENSP00000326391	I
Gfo_R007094	Geospiza fortis	Gfo_R007094	I
Ogr03050	Ophisaurus gracilis	Ogr03050	I
Pvit_16465	Pogona vitticeps	Pvit_16465	I
Tal_R009599	Tyto alba	Tal_R009599	I
estExt_fgenesh2_pg.C_2400032	Branchiostoma floridae	estExt_fgenesh2_pg.C_2400032	I
XP_002931994	Xenopus tropicalis	XP_002931994	I
BHLHA15	Loxodonta africana	ENSLAFG00000000139	I
ENSAMXG00000025873	Astyanax mexicanus	ENSAMXG00000025873	I
ENSAPLG00000001024	Anas platyrhynchos	ENSAPLG00000001024	I
BHLHA15	Bos taurus	ENSBTAG00000046010	I
BHLHA15	Canis familiaris	ENSCAFG00000015425	I
BHLHA15	Callithrix jacchus	ENSCJAG00000023085	I
ENSCPOG00000009423	Cavia porcellus	ENSCPOG00000009423	I
ENSCSAG00000019492	Chlorocebus sabaeus	ENSCSAG00000019492	I
bhlha15	Danio rerio	ENSDARG00000045166	I
ENSECAG00000012532	Equus caballus	ENSECAG00000012532	I
bhlha15	Gasterosteus aculeatus	ENSGACG00000009403	I
ENSGMOG00000003972	Gadus morhua	ENSGMOG00000003972	I
ENSLACG00000013715	Latimeria chalumnae	ENSLACG00000013715	I
ENSPANG00000010823	Papio anubis	ENSPANG00000010823	I
BHLHA15	Meleagris gallopavo	ENSMGAG00000015527	I
BHLHA15	Myotis lucifugus	ENSMLUG00000009476	I
ENSMMUG00000015478	Macaca mulatta	ENSMMUG00000015478	I
BHLHA15	Monodelphis domestica	ENSMODG00000025044	I
ENSMPUG00000020102	Mustela putorius furo	ENSMPUG00000020102	I
ENSNLEG00000018875	Nomascus leucogenys	ENSNLEG00000018875	I
BHLHA15	Ornithorhynchus anatinus	ENSOANG00000001937	I
BHLHA15	Oryctolagus cuniculus	ENSOCUG00000025058	I
BHLHA15	Otolemur garnettii	ENSOGAG00000010106	I
ENSONIG00000021203	Oreochromis niloticus	ENSONIG00000021203	I
ENSACAG00000012378	Anolis carolinensis	ENSACAG00000012378	I

Carubv10010105m.g (Capsella rubella) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1851 Related TFs

Carubv10010105m.g **(Capsella rubella)
AP2**