CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ciclev10005220m.g *(Citrus clementina)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Ciclev10005220m.g	T007961_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.809	0.880
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.804	0.840
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.799	0.840
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.799	0.840
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.799	0.840
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.780	0.780
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.771	0.800
ERF069 M01604_2.00	Arabidopsis thaliana	NNGCCGNNN	NNNCGGCNN	PBM Weirauch et al.(2014) pTH7550	0.758	0.800
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.723	0.660
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.721	0.680
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.721	0.680
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.721	0.680
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.720	0.700
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.717	0.700
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.717	0.700
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.717	0.700
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.713	0.680
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.712	0.660
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.712	0.740
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.708	0.660
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.708	0.640
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.708	0.640
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.708	0.640
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.707	0.700
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.707	0.700
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.707	0.700
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.706	0.660
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.705	0.640
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.704	0.720
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.704	0.660
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.704	0.660
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.703	0.620
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.703	0.620
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.702	0.680
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.699	0.620
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.699	0.620
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.698	0.680
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.696	0.660
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.696	0.660
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.694	0.660
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.690	0.660
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.690	0.580
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.690	0.660
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.690	0.660
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.688	0.680
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.688	0.680
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.688	0.680
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.686	0.600
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.686	0.600
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.679	0.620
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.678	0.660
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.677	0.640
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.677	0.640
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ciclev10005220m	AP2	124	175	KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGP

Links
Other AP2 family TFs
Other *Citrus clementina* TFs

1772 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMXG00000020233	Astyanax mexicanus	ENSAMXG00000020233	I
ENSPFOG00000016287	Poecilia formosa	ENSPFOG00000016287	I
arntl2	Oryzias latipes	ENSORLG00000010946	I
arntl2	Danio rerio	ENSDARG00000041381	I
ENSONIG00000014665	Oreochromis niloticus	ENSONIG00000014665	I
arntl2	Tetraodon nigroviridis	ENSTNIG00000012142	I
arntl2	Takifugu rubripes	ENSTRUG00000007832	I
ENSXMAG00000001482	Xiphophorus maculatus	ENSXMAG00000001482	I
ENSPSIG00000009416	Pelodiscus sinensis	ENSPSIG00000009416	N
ARNTL2	Procavia capensis	ENSPCAG00000008486	N
ARNTL2	Pan troglodytes	ENSPTRG00000004788	N
ARNTL2	Pteropus vampyrus	ENSPVAG00000013771	N
ARNTL2	Sus scrofa	ENSSSCG00000000551	N
ENSSTOG00000001344	Ictidomys tridecemlineatus	ENSSTOG00000001344	N
ENSTGUG00000012163	Taeniopygia guttata	ENSTGUG00000012163	N
ENSTSYG00000005541	Tarsius syrichta	ENSTSYG00000005541	N
ARNTL2	Tursiops truncatus	ENSTTRG00000012339	N
Aan_R007949	Calypte anna	Aan_R007949	N
Afo_R006305	Aptenodytes forsteri	Afo_R006305	N
Brh_R011091	Buceros rhinoceros	Brh_R011091	N
Cmyd_10013756	Chelonia mydas	Cmyd_10013756	N
ENSP00000266503-D1	Bos grunniens	ENSP00000266503-D1	N
ENSP00000266503	Macaca fascicularis	ENSP00000266503	N
Gfo_R015185	Geospiza fortis	Gfo_R015185	N
Myotis_brandtii_ARNTL2_10027352	Myotis brandtii	Myotis_brandtii_ARNTL2_10027352	N
Ogr07520	Ophisaurus gracilis	Ogr07520	N
Pvit_19389	Pogona vitticeps	Pvit_19389	N
Tal_R011603	Tyto alba	Tal_R011603	N
ENSLOCG00000015224	Lepisosteus oculatus	ENSLOCG00000015224	N
ENSAMEG00000011610	Ailuropoda melanoleuca	ENSAMEG00000011610	N
ENSAPLG00000008758	Anas platyrhynchos	ENSAPLG00000008758	N
ARNTL2	Bos taurus	ENSBTAG00000011804	N
ARNTL2	Canis familiaris	ENSCAFG00000011089	N
ENSCSAG00000007636	Chlorocebus sabaeus	ENSCSAG00000007636	N
ENSFALG00000003942	Ficedula albicollis	ENSFALG00000003942	N
ARNTL2	Felis catus	ENSFCAG00000000386	N
ARNTL2	Homo sapiens	ENSG00000029153	N
ARNTL2	Gallus gallus	ENSGALG00000014096	N
ENSLACG00000009646	Latimeria chalumnae	ENSLACG00000009646	N
ENSPPYG00000004380	Pongo abelii	ENSPPYG00000004380	N
ENSMEUG00000007045	Macropus eugenii	ENSMEUG00000007045	N
ARNTL2	Meleagris gallopavo	ENSMGAG00000013735	N
ARNTL2	Myotis lucifugus	ENSMLUG00000003256	N
ARNTL2	Macaca mulatta	ENSMMUG00000023249	N
ENSMPUG00000010512	Mustela putorius furo	ENSMPUG00000010512	N
ENSNLEG00000005463	Nomascus leucogenys	ENSNLEG00000005463	N
ENSOARG00000019779	Ovis aries	ENSOARG00000019779	N
ARNTL2	Otolemur garnettii	ENSOGAG00000011668	N
ENSPANG00000004474	Papio anubis	ENSPANG00000004474	N
ARNTL2	Anolis carolinensis	ENSACAG00000012446	N

Ciclev10005220m.g (Citrus clementina) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1772 Related TFs

Ciclev10005220m.g **(Citrus clementina)
AP2**