Ciclev10013851m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10013851m.g T007997_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.876 0.856
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.876 0.856
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.846 0.837
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.846 0.837
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.842 0.837
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.842 0.837
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.829 0.846
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.829 0.846
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10013851m AP2 296 353
Ciclev10013851m AP2 395 447

Links

Other AP2 family TFs
Other Citrus clementina TFs

525 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
da Drosophila melanogaster FBgn0000413 D 0.000
ACUA015759 Anopheles culicifacies ACUA015759 I 0.000
TC009743 Tribolium castaneum TC009743 I 0.000
YQE_12444 Dendroctonus ponderosae YQE_12444 I 0.000
Cflo_06641--XP_394032.3_APIME Camponotus floridanus Cflo_06641--XP_394032.3_APIME I 0.000
Hsal_01424--XP_394032.3_APIME Harpegnathos saltator Hsal_01424--XP_394032.3_APIME I 0.000
CLEC011986 Cimex lectularius CLEC011986 I 0.000
LCUP014805 Lucilia cuprina LCUP014805 I 0.000
LCUP015675 Lucilia cuprina LCUP015675 I 0.000
LDEC016095 Leptinotarsa decemlineata LDEC016095 I 0.000
AALB001175 Anopheles albimanus AALB001175 I 0.000
AARA010786 Anopheles arabiensis AARA010786 I 0.000
AATE001337 Anopheles atroparvus AATE001337 I 0.000
ACOM039284 Anopheles coluzzii ACOM039284 I 0.000
SINV15659 Solenopsis invicta SINV15659 I 0.000
ADIR011358 Anopheles dirus ADIR011358 I 0.000
AEPI010093 Anopheles epiroticus AEPI010093 I 0.000
AFUN010901 Anopheles funestus AFUN010901 I 0.000
AMAM016616 Anopheles maculatus AMAM016616 I 0.000
AMEC022127 Anopheles melas AMEC022127 I 0.000
AMEM007225 Anopheles merus AMEM007225 I 0.000
AMIN007190 Anopheles minimus AMIN007190 I 0.000
AQUA004188 Anopheles quadriannulatus AQUA004188 I 0.000
ASTEI05038 Anopheles stephensi ASTEI05038 I 0.000
LLOJ002325 Lutzomyia longipalpis LLOJ002325 I 0.000
MDOA011656 Musca domestica MDOA011656 I 0.000
GI19105 Drosophila mojavensis FBgn0141844 I 0.000
AAEL010226 Aedes aegypti AAEL010226 I 0.000
ACEP22357 Atta cephalotes ACEP22357 I 0.000
ACYPI003796 Acyrthosiphon pisum ACYPI003796 I 0.000
ADAC004782 Anopheles darlingi ADAC004782 I 0.000
AGAP008814 Anopheles gambiae AGAP008814 I 0.000
BGIBMGA003285 Bombyx mori BGIBMGA003285 I 0.000
CPIJ006828 Culex quinquefasciatus CPIJ006828 I 0.000
DAPPUDRAFT_299735 Daphnia pulex DAPPUDRAFT_299735 I 0.000
GF15779 Drosophila ananassae FBgn0092803 I 0.000
GG10122 Drosophila erecta FBgn0102433 I 0.000
GH13857 Drosophila grimshawi FBgn0121333 I 0.000
CpipJ_CPIJ006828 Culex pipiens CpipJ_CPIJ006828 I 0.000
GM18305 Drosophila sechellia FBgn0173212 I 0.000
GD23692 Drosophila simulans FBgn0195069 I 0.000
GJ15409 Drosophila virilis FBgn0202603 I 0.000
GK12476 Drosophila willistoni FBgn0214486 I 0.000
GE18936 Drosophila yakuba FBgn0236308 I 0.000
GB41727 Apis mellifera GB41727 I 0.000
KGM_13328 Danaus plexippus KGM_13328 I 0.000
L798_13597 Zootermopsis nevadensis L798_13597 I 0.000
MESCA003205 Megaselia scalaris MESCA003205 I 0.000
NV16928 Nasonia vitripennis NV16928 I 0.000
PHUM374400 Pediculus humanus PHUM374400 I 0.000