Pavir.J03624 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J03624 T009552_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.817 0.920
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.817 0.920
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.813 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03624.1.p AP2 160 211

Links

Other AP2 family TFs
Other Panicum virgatum TFs

437 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_1BL_A8B8F33D9 Triticum aestivum Traes_1BL_A8B8F33D9 N
Traes_3DS_31B0043F6 Triticum aestivum Traes_3DS_31B0043F6 N
Traes_6AS_073DEE100 Triticum aestivum Traes_6AS_073DEE100 N
Traes_6BS_945FD8DAC1 Triticum aestivum Traes_6BS_945FD8DAC1 N
Traes_6BS_A3531CD43 Triticum aestivum Traes_6BS_A3531CD43 N
Traes_6BS_FA68506CF Triticum aestivum Traes_6BS_FA68506CF N
Traes_6DS_BF460054E Triticum aestivum Traes_6DS_BF460054E N
Traes_6DS_E67EB0CBE Triticum aestivum Traes_6DS_E67EB0CBE N
Traes_7BS_E70858C081 Triticum aestivum Traes_7BS_E70858C081 N
Traes_7DS_6B1F6F5E5 Triticum aestivum Traes_7DS_6B1F6F5E5 N