e_gw1.5.76.1 (Nectria haematococca)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04383 (KilA-N) IPR018004 e_gw1.5.76.1 T013902_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw1.5.76.1
M01652_2.00		 Nectria haematococca
NNVTGCABNN
NNVTGCABNN		 PBM
Weirauch et al.(2014)
pTH9267		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HCAG_07413
M01651_2.00 		Histoplasma capsulatum
NNNHRYDNNN
NNNHRYDNNN		 PBM
Weirauch et al.(2014)
pTH9346 		0.851 0.915
stuA
M01649_2.00 		Aspergillus nidulans
NNTGCAKNNN
NNNMTGCANN		 PBM
Weirauch et al.(2014)
pTH9236 		0.724 0.866
stuA
M09761_2.00 		Aspergillus nidulans
DBDCGCGWWB
VWWCGCGHVH		 Transfac
Matys et al.(2006)
F$STUAP_01 		0.724 0.866
For this family, TFs with SR scores > 0.650 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01652_2.00 APSES 50 136

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.5.76.1 APSES 123 209

Links

Other APSES family TFs
Other Nectria haematococca TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022425 Oryza indica BGIOSGA022425 N
BRADI1G47562 Brachypodium distachyon BRADI1G47562 N
OBART06G05260 Oryza barthii OBART06G05260 N
OGLUM06G05410 Oryza glumaepatula OGLUM06G05410 N
OLONG_005462 Oryza longistaminata OLONG_005462 N
OMERI06G06280 Oryza meridionalis OMERI06G06280 N
ONIVA06G06040 Oryza nivara ONIVA06G06040 N
OPUNC06G05020 Oryza punctata OPUNC06G05020 N
ORUFI06G05310 Oryza rufipogon ORUFI06G05310 N
Sb02g020870 Sorghum bicolor Sb02g020870 N
Sb08g005140 Sorghum bicolor Sb08g005140 N
Sb10g005480 Sorghum bicolor Sb10g005480 N
Si006005m.g Setaria italica Si006005m.g N
Traes_7BS_D06222817 Triticum aestivum Traes_7BS_D06222817 N
Pavir.J08903 Panicum virgatum Pavir.J08903 N