cassava10018.m1 (Manihot esculenta)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 cassava10018.m1 T015950_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARID3
M06695_2.00
Arabidopsis thaliana
AAWWHNAAATYAAWW

WWTTRATTTNDWWTT
Dap-seq
OMalley et al.(2016)
AT2G17410_col_a
0.488 0.923
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava10018.m1 ARID/BRIGHT 1 39

Links

Other ARID/BRIGHT family TFs
Other Manihot esculenta TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AC165171.2_FG002 Zea mays AC165171.2_FG002 I
Al_scaffold_0008_672 Arabidopsis lyrata Al_scaffold_0008_672 I
Al_scaffold_0008_813 Arabidopsis lyrata Al_scaffold_0008_813 I
WRKY58 Arabidopsis thaliana AT3G01080 I
WRKY49 Arabidopsis thaliana AT5G43290 I
BGIOSGA036825 Oryza indica BGIOSGA036825 I
Bo2g137260 Brassica oleracea Bo2g137260 I
fgenesh2_kg.97__1__AT5G43290.1 Arabidopsis lyrata fgenesh2_kg.97__1__AT5G43290.1 I
GLYMA07G16040 Glycine max GLYMA07G16040 I
GLYMA18G39970 Glycine max GLYMA18G39970 I
GRMZM2G012724 Zea mays GRMZM2G012724 I
GRMZM2G020254 Zea mays GRMZM2G020254 I
GRMZM2G052671 Zea mays GRMZM2G052671 I
GRMZM2G145554 Zea mays GRMZM2G145554 I
GRMZM2G151407 Zea mays GRMZM2G151407 I
GSMUA_Achr10G00810_001 Musa acuminata GSMUA_Achr10G00810_001 I
GSMUA_Achr3G31310_001 Musa acuminata GSMUA_Achr3G31310_001 I
GSMUA_Achr7G15060_001 Musa acuminata GSMUA_Achr7G15060_001 I
GSMUA_Achr8G02180_001 Musa acuminata GSMUA_Achr8G02180_001 I
GSMUA_AchrUn_randomG17930_001 Musa acuminata GSMUA_AchrUn_randomG17930_001 I
GSMUA_AchrUn_randomG18710_001 Musa acuminata GSMUA_AchrUn_randomG18710_001 I
LPERR05G22790 Leersia perrieri LPERR05G22790 I
LPERR11G00140 Leersia perrieri LPERR11G00140 I
LPERR12G00330 Leersia perrieri LPERR12G00330 I
MLOC_10687 Hordeum vulgare MLOC_10687 I
MLOC_58019 Hordeum vulgare MLOC_58019 I
MLOC_74884 Hordeum vulgare MLOC_74884 I
MLOC_77883 Hordeum vulgare MLOC_77883 I
MTR_7g062220 Medicago truncatula MTR_7g062220 I
OB0102G10020 Oryza brachyantha OB0102G10020 I
OB05G34770 Oryza brachyantha OB05G34770 I
OB12G10150 Oryza brachyantha OB12G10150 I
OBART11G00090 Oryza barthii OBART11G00090 I
OGLUM12G00050 Oryza glumaepatula OGLUM12G00050 I
OLONG_003355 Oryza longistaminata OLONG_003355 I
ONIVA04G13890 Oryza nivara ONIVA04G13890 I
ONIVA12G00200 Oryza nivara ONIVA12G00200 I
OPUNC12G00230 Oryza punctata OPUNC12G00230 I
ORUFI12G00130 Oryza rufipogon ORUFI12G00130 I
PGSC0003DMG400011633 Solanum tuberosum PGSC0003DMG400011633 I
PGSC0003DMG400016769 Solanum tuberosum PGSC0003DMG400016769 I
PGSC0003DMG400018061 Solanum tuberosum PGSC0003DMG400018061 I
PGSC0003DMG400023360 Solanum tuberosum PGSC0003DMG400023360 I
PGSC0003DMG400029815 Solanum tuberosum PGSC0003DMG400029815 I
PRUPE_ppa019550mg Prunus persica PRUPE_ppa019550mg I
Sb02g027950 Sorghum bicolor Sb02g027950 I
Sb03g047350 Sorghum bicolor Sb03g047350 I
Sb07g006230 Sorghum bicolor Sb07g006230 I
scaffold_800733.1 Arabidopsis lyrata scaffold_800733.1 I
scaffold_800734.1 Arabidopsis lyrata scaffold_800734.1 I
scaffold_9700001.1 Arabidopsis lyrata scaffold_9700001.1 I
Si005025m.g Setaria italica Si005025m.g I
Si014939m.g Setaria italica Si014939m.g I
Si029342m.g Setaria italica Si029342m.g I
TCM_011624 Theobroma cacao TCM_011624 I
TCM_021911 Theobroma cacao TCM_021911 I
TRIUR3_09583 Triticum urartu TRIUR3_09583 I
WRKY49 Vitis vinifera VIT_08s0007g00570 I
Cla018477 Citrullus lanatus Cla018477 I
Pm002679 Prunus mume Pm002679 I
cassava1777.valid.m1 Manihot esculenta cassava1777.valid.m1 I
cassava1779.valid.m1 Manihot esculenta cassava1779.valid.m1 I
cassava1780.valid.m1 Manihot esculenta cassava1780.valid.m1 I
Cucsa.042350 Cucumis sativus Cucsa.042350 I
Cucsa.066300 Cucumis sativus Cucsa.066300 I
gw1.137.58.1 Physcomitrella patens gw1.137.58.1 I
gw1.26.202.1 Volvox carteri gw1.26.202.1 I
gw1.39.46.1 Dictyostelium purpureum gw1.39.46.1 I
mgf023486m Mimulus guttatus mgf023486m I
Bostr.3148s0146 Boechera stricta Bostr.3148s0146 I
Cagra.9063s0001 Capsella grandiflora Cagra.9063s0001 I
Carubv10026841m.g Capsella rubella Carubv10026841m.g I
Ciclev10007904m.g Citrus clementina Ciclev10007904m.g I
Ciclev10013616m.g Citrus clementina Ciclev10013616m.g I
Eucgr.I01998 Eucalyptus grandis Eucgr.I01998 I
Eucgr.J02655 Eucalyptus grandis Eucgr.J02655 I
Eucgr.K03115 Eucalyptus grandis Eucgr.K03115 I
gene18438-v1.0-hybrid Fragaria vesca gene18438-v1.0-hybrid I
Gorai.001G032200 Gossypium raimondii Gorai.001G032200 I
Gorai.003G150700 Gossypium raimondii Gorai.003G150700 I
Gorai.006G013300 Gossypium raimondii Gorai.006G013300 I
Gorai.009G421200 Gossypium raimondii Gorai.009G421200 I
Gorai.012G104800 Gossypium raimondii Gorai.012G104800 I
Gorai.012G119600 Gossypium raimondii Gorai.012G119600 I
Gorai.013G090200 Gossypium raimondii Gorai.013G090200 I
MDP0000205962 Malus domestica MDP0000205962 I
MDP0000255768 Malus domestica MDP0000255768 I
orange1.1g008458m.g Citrus sinensis orange1.1g008458m.g I
orange1.1g011483m.g Citrus sinensis orange1.1g011483m.g I
orange1.1g038951m.g Citrus sinensis orange1.1g038951m.g I
Pavir.Bb02418 Panicum virgatum Pavir.Bb02418 I
Pavir.Eb02133 Panicum virgatum Pavir.Eb02133 I
Pavir.Fa00406 Panicum virgatum Pavir.Fa00406 I
Pavir.Fb01969 Panicum virgatum Pavir.Fb01969 I
Pavir.J14149 Panicum virgatum Pavir.J14149 I
Pavir.J27870 Panicum virgatum Pavir.J27870 I
Pavir.J40119 Panicum virgatum Pavir.J40119 I
SapurV1A.0222s0350 Salix purpurea SapurV1A.0222s0350 I
SapurV1A.0338s0300 Salix purpurea SapurV1A.0338s0300 I
Thhalv10003250m.g Eutrema salsugineum Thhalv10003250m.g I
Thhalv10016764m.g Eutrema salsugineum Thhalv10016764m.g I
PK25933.1 Cannabis sativa PK25933.1 I
chr1.CM0147.890.nc Lotus japonicus chr1.CM0147.890.nc I
chr2.CM0641.50.nc Lotus japonicus chr2.CM0641.50.nc I
PDK_20s1309411g001 Phoenix dactylifera PDK_20s1309411g001 I
MTR_5g074200 Medicago truncatula MTR_5g074200 N
OS08G0276200 Oryza sativa OS08G0276200 N
evm.TU.supercontig_46.151 Carica papaya evm.TU.supercontig_46.151 N