CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava10018.m1
(
Manihot esculenta
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
cassava10018.m1
T015950_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARID3
M06695_2.00
Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT
Dap-seq
OMalley et al.(2016)
AT2G17410_col_a
0.488
0.923
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava10018.m1
ARID/BRIGHT
1
39
VTSCKLWRQVGESFRPPKTCTTVSWTFRIFYEKALLEYE
Links
Other
ARID/BRIGHT
family TFs
Other
Manihot esculenta
TFs
142 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC165171.2_FG002
Zea mays
AC165171.2_FG002
I
Al_scaffold_0008_672
Arabidopsis lyrata
Al_scaffold_0008_672
I
Al_scaffold_0008_813
Arabidopsis lyrata
Al_scaffold_0008_813
I
WRKY58
Arabidopsis thaliana
AT3G01080
I
WRKY49
Arabidopsis thaliana
AT5G43290
I
BGIOSGA036825
Oryza indica
BGIOSGA036825
I
Bo2g137260
Brassica oleracea
Bo2g137260
I
fgenesh2_kg.97__1__AT5G43290.1
Arabidopsis lyrata
fgenesh2_kg.97__1__AT5G43290.1
I
GLYMA07G16040
Glycine max
GLYMA07G16040
I
GLYMA18G39970
Glycine max
GLYMA18G39970
I
GRMZM2G012724
Zea mays
GRMZM2G012724
I
GRMZM2G020254
Zea mays
GRMZM2G020254
I
GRMZM2G052671
Zea mays
GRMZM2G052671
I
GRMZM2G145554
Zea mays
GRMZM2G145554
I
GRMZM2G151407
Zea mays
GRMZM2G151407
I
GSMUA_Achr10G00810_001
Musa acuminata
GSMUA_Achr10G00810_001
I
GSMUA_Achr3G31310_001
Musa acuminata
GSMUA_Achr3G31310_001
I
GSMUA_Achr7G15060_001
Musa acuminata
GSMUA_Achr7G15060_001
I
GSMUA_Achr8G02180_001
Musa acuminata
GSMUA_Achr8G02180_001
I
GSMUA_AchrUn_randomG17930_001
Musa acuminata
GSMUA_AchrUn_randomG17930_001
I
GSMUA_AchrUn_randomG18710_001
Musa acuminata
GSMUA_AchrUn_randomG18710_001
I
LPERR05G22790
Leersia perrieri
LPERR05G22790
I
LPERR11G00140
Leersia perrieri
LPERR11G00140
I
LPERR12G00330
Leersia perrieri
LPERR12G00330
I
MLOC_10687
Hordeum vulgare
MLOC_10687
I
MLOC_58019
Hordeum vulgare
MLOC_58019
I
MLOC_74884
Hordeum vulgare
MLOC_74884
I
MLOC_77883
Hordeum vulgare
MLOC_77883
I
MTR_7g062220
Medicago truncatula
MTR_7g062220
I
OB0102G10020
Oryza brachyantha
OB0102G10020
I
OB05G34770
Oryza brachyantha
OB05G34770
I
OB12G10150
Oryza brachyantha
OB12G10150
I
OBART11G00090
Oryza barthii
OBART11G00090
I
OGLUM12G00050
Oryza glumaepatula
OGLUM12G00050
I
OLONG_003355
Oryza longistaminata
OLONG_003355
I
ONIVA04G13890
Oryza nivara
ONIVA04G13890
I
ONIVA12G00200
Oryza nivara
ONIVA12G00200
I
OPUNC12G00230
Oryza punctata
OPUNC12G00230
I
ORUFI12G00130
Oryza rufipogon
ORUFI12G00130
I
PGSC0003DMG400011633
Solanum tuberosum
PGSC0003DMG400011633
I
PGSC0003DMG400016769
Solanum tuberosum
PGSC0003DMG400016769
I
PGSC0003DMG400018061
Solanum tuberosum
PGSC0003DMG400018061
I
PGSC0003DMG400023360
Solanum tuberosum
PGSC0003DMG400023360
I
PGSC0003DMG400029815
Solanum tuberosum
PGSC0003DMG400029815
I
PRUPE_ppa019550mg
Prunus persica
PRUPE_ppa019550mg
I
Sb02g027950
Sorghum bicolor
Sb02g027950
I
Sb03g047350
Sorghum bicolor
Sb03g047350
I
Sb07g006230
Sorghum bicolor
Sb07g006230
I
scaffold_800733.1
Arabidopsis lyrata
scaffold_800733.1
I
scaffold_800734.1
Arabidopsis lyrata
scaffold_800734.1
I
scaffold_9700001.1
Arabidopsis lyrata
scaffold_9700001.1
I
Si005025m.g
Setaria italica
Si005025m.g
I
Si014939m.g
Setaria italica
Si014939m.g
I
Si029342m.g
Setaria italica
Si029342m.g
I
TCM_011624
Theobroma cacao
TCM_011624
I
TCM_021911
Theobroma cacao
TCM_021911
I
TRIUR3_09583
Triticum urartu
TRIUR3_09583
I
WRKY49
Vitis vinifera
VIT_08s0007g00570
I
Cla018477
Citrullus lanatus
Cla018477
I
Pm002679
Prunus mume
Pm002679
I
cassava1777.valid.m1
Manihot esculenta
cassava1777.valid.m1
I
cassava1779.valid.m1
Manihot esculenta
cassava1779.valid.m1
I
cassava1780.valid.m1
Manihot esculenta
cassava1780.valid.m1
I
Cucsa.042350
Cucumis sativus
Cucsa.042350
I
Cucsa.066300
Cucumis sativus
Cucsa.066300
I
gw1.137.58.1
Physcomitrella patens
gw1.137.58.1
I
gw1.26.202.1
Volvox carteri
gw1.26.202.1
I
gw1.39.46.1
Dictyostelium purpureum
gw1.39.46.1
I
mgf023486m
Mimulus guttatus
mgf023486m
I
Bostr.3148s0146
Boechera stricta
Bostr.3148s0146
I
Cagra.9063s0001
Capsella grandiflora
Cagra.9063s0001
I
Carubv10026841m.g
Capsella rubella
Carubv10026841m.g
I
Ciclev10007904m.g
Citrus clementina
Ciclev10007904m.g
I
Ciclev10013616m.g
Citrus clementina
Ciclev10013616m.g
I
Eucgr.I01998
Eucalyptus grandis
Eucgr.I01998
I
Eucgr.J02655
Eucalyptus grandis
Eucgr.J02655
I
Eucgr.K03115
Eucalyptus grandis
Eucgr.K03115
I
gene18438-v1.0-hybrid
Fragaria vesca
gene18438-v1.0-hybrid
I
Gorai.001G032200
Gossypium raimondii
Gorai.001G032200
I
Gorai.003G150700
Gossypium raimondii
Gorai.003G150700
I
Gorai.006G013300
Gossypium raimondii
Gorai.006G013300
I
Gorai.009G421200
Gossypium raimondii
Gorai.009G421200
I
Gorai.012G104800
Gossypium raimondii
Gorai.012G104800
I
Gorai.012G119600
Gossypium raimondii
Gorai.012G119600
I
Gorai.013G090200
Gossypium raimondii
Gorai.013G090200
I
MDP0000205962
Malus domestica
MDP0000205962
I
MDP0000255768
Malus domestica
MDP0000255768
I
orange1.1g008458m.g
Citrus sinensis
orange1.1g008458m.g
I
orange1.1g011483m.g
Citrus sinensis
orange1.1g011483m.g
I
orange1.1g038951m.g
Citrus sinensis
orange1.1g038951m.g
I
Pavir.Bb02418
Panicum virgatum
Pavir.Bb02418
I
Pavir.Eb02133
Panicum virgatum
Pavir.Eb02133
I
Pavir.Fa00406
Panicum virgatum
Pavir.Fa00406
I
Pavir.Fb01969
Panicum virgatum
Pavir.Fb01969
I
Pavir.J14149
Panicum virgatum
Pavir.J14149
I
Pavir.J27870
Panicum virgatum
Pavir.J27870
I
Pavir.J40119
Panicum virgatum
Pavir.J40119
I
SapurV1A.0222s0350
Salix purpurea
SapurV1A.0222s0350
I
SapurV1A.0338s0300
Salix purpurea
SapurV1A.0338s0300
I
Thhalv10003250m.g
Eutrema salsugineum
Thhalv10003250m.g
I
Thhalv10016764m.g
Eutrema salsugineum
Thhalv10016764m.g
I
PK25933.1
Cannabis sativa
PK25933.1
I
chr1.CM0147.890.nc
Lotus japonicus
chr1.CM0147.890.nc
I
chr2.CM0641.50.nc
Lotus japonicus
chr2.CM0641.50.nc
I
PDK_20s1309411g001
Phoenix dactylifera
PDK_20s1309411g001
I
MTR_5g074200
Medicago truncatula
MTR_5g074200
N
OS08G0276200
Oryza sativa
OS08G0276200
N
evm.TU.supercontig_46.151
Carica papaya
evm.TU.supercontig_46.151
N