Thhalv10018578m.g (Eutrema salsugineum)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Thhalv10018578m.g T016189_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.776
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.659 0.824
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10018578m ARID/BRIGHT 145 230

Links

Other ARID/BRIGHT family TFs
Other Eutrema salsugineum TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA08G0039300 Oryza glaberrima ORGLA08G0039300 I
Thhalv10008615m.g Eutrema salsugineum Thhalv10008615m.g I
SapurV1A.1095s0050 Salix purpurea SapurV1A.1095s0050 I
Carubv10012659m.g Capsella rubella Carubv10012659m.g I
Cagra.0568s0211 Capsella grandiflora Cagra.0568s0211 I
Bostr.13671s0161 Boechera stricta Bostr.13671s0161 I
mgf025433m Mimulus guttatus mgf025433m I
cassava21477.m1 Manihot esculenta cassava21477.m1 I
POPTR_0019s11780 Populus trichocarpa POPTR_0019s11780 I
OS08G0173700 Oryza sativa OS08G0173700 I
ORUFI08G04980 Oryza rufipogon ORUFI08G04980 I
ERF088 Arabidopsis thaliana AT1G12890 I
OPUNC08G04370 Oryza punctata OPUNC08G04370 I
ONIVA08G04340 Oryza nivara ONIVA08G04340 I
OGLUM08G04690 Oryza glumaepatula OGLUM08G04690 I
LPERR08G04370 Leersia perrieri LPERR08G04370 I
GSMUA_Achr7G17910_001 Musa acuminata GSMUA_Achr7G17910_001 I
GSMUA_Achr6G35320_001 Musa acuminata GSMUA_Achr6G35320_001 I
fgenesh2_kg.1__1396__AT1G12890.1 Arabidopsis lyrata fgenesh2_kg.1__1396__AT1G12890.1 I
Bra026949 Brassica rapa Bra026949 I
Bo8g107890 Brassica oleracea Bo8g107890 I
BGIOSGA027571 Oryza indica BGIOSGA027571 I