POPTR_0014s12980 (Populus trichocarpa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 POPTR_0014s12980 T020910_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF2
M06714_2.00 		Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN		 Dap-seq
OMalley et al.(2016)
ARF2_col_v31 		0.776 0.776
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s12980.1 B3 132 234

Links

Other B3 family TFs
Other Populus trichocarpa TFs

264 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARF2 Arabidopsis thaliana AT5G62000 D 0.776
ARF9 Arabidopsis lyrata Al_scaffold_0007_1752 I 0.714
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.742
AMTR_s00021p00200760 Amborella trichopoda AMTR_s00021p00200760 I 0.714
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.765
ARF11 Arabidopsis thaliana AT2G46530 I 0.704
ARF18 Arabidopsis thaliana AT3G61830 I 0.714
ARF9 Arabidopsis thaliana AT4G23980 I 0.714
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.755
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.729
ARF23 Oryza indica BGIOSGA033901 I 0.776
Bo01141s010 Brassica oleracea Bo01141s010 I 0.714
Bo1g037360 Brassica oleracea Bo1g037360 I 0.724
Bo2g161810 Brassica oleracea Bo2g161810 I 0.776
Bo3g108130 Brassica oleracea Bo3g108130 I 0.776
Bo7g109250 Brassica oleracea Bo7g109250 I 0.704
Bo8g097320 Brassica oleracea Bo8g097320 I 0.714
Bo9g014770 Brassica oleracea Bo9g014770 I 0.776
Bra010048 Brassica rapa Bra010048 I 0.776
Bra013748 Brassica rapa Bra013748 I 0.714
Bra014419 Brassica rapa Bra014419 I 0.714
Bra019255 Brassica rapa Bra019255 I 0.704
Bra035910 Brassica rapa Bra035910 I 0.776
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.776
BRADI4G07470 Brachypodium distachyon BRADI4G07470 I 0.755
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.776
BRADI5G10950 Brachypodium distachyon BRADI5G10950 I 0.711
F775_31280 Aegilops tauschii F775_31280 I 0.786
F775_32662 Aegilops tauschii F775_32662 I 0.776
ARF18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002633 I 0.714
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.724
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.724
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.724
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.786
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.776
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.786
GLYMA07G06060 Glycine max GLYMA07G06060 I 0.735
GLYMA07G16170 Glycine max GLYMA07G16170 I 0.714
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.776
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.753
GLYMA16G02650 Glycine max GLYMA16G02650 I 0.735
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.765
GRMZM2G017187 Zea mays GRMZM2G017187 I 0.708
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.786
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.726
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.776
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.765
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.742
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.786
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.724
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.705
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.745
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.786
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.719
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.714
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.732
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.704
GSMUA_AchrUn_randomG14770_001 Musa acuminata GSMUA_AchrUn_randomG14770_001 I 0.765
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.776
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.776
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.714
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.776
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.753
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.735
MTR_7g062540 Medicago truncatula MTR_7g062540 I 0.711
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.786
OB02G28170 Oryza brachyantha OB02G28170 I 0.705
OB04G20880 Oryza brachyantha OB04G20880 I 0.701
OB11G21910 Oryza brachyantha OB11G21910 I 0.776
OB12G20020 Oryza brachyantha OB12G20020 I 0.765
OBART01G42570 Oryza barthii OBART01G42570 I 0.755
OBART11G15270 Oryza barthii OBART11G15270 I 0.776
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.765
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.729
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.776
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.776
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.755
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.729
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.776
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.755
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.729
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.776
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.765
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.704
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.776
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.755
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.729
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.776
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.755
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.729
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.776
ARF4 Oryza sativa OS01G0927600 I 0.755
ARF9 Oryza sativa OS04G0442000 I 0.729
OS11G0523800 Oryza sativa OS11G0523800 I 0.776
PGSC0003DMG400012261 Solanum tuberosum PGSC0003DMG400012261 I 0.724
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.776
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.776
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.745
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.735
POPTR_0001s13110 Populus trichocarpa POPTR_0001s13110 I 0.711
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.714
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.735
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.722
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.755
POPTR_0009s01700 Populus trichocarpa POPTR_0009s01700 I 0.704
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.786
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.714
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.786
XM_002320618.1 Populus trichocarpa POPTR_0020s00210 I 0.867
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.776
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.714
PRUPE_ppa002617mg Prunus persica PRUPE_ppa002617mg I 0.704
PRUPE_ppa022314mg Prunus persica PRUPE_ppa022314mg I 0.786
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.776
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.719
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.765
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.776
Si000340m.g Setaria italica Si000340m.g I 0.776
Si009558m.g Setaria italica Si009558m.g I 0.719
Si021216m.g Setaria italica Si021216m.g I 0.765
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.786
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.776
TCM_004526 Theobroma cacao TCM_004526 I 0.755
TCM_005126 Theobroma cacao TCM_005126 I 0.724
TCM_008374 Theobroma cacao TCM_008374 I 0.776
TCM_014743 Theobroma cacao TCM_014743 I 0.776
TCM_016500 Theobroma cacao TCM_016500 I 0.724
TCM_027113 Theobroma cacao TCM_027113 I 0.742
Traes_2BL_1AED96909 Triticum aestivum Traes_2BL_1AED96909 I 0.711
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.776
Traes_3DL_1FC3735D9 Triticum aestivum Traes_3DL_1FC3735D9 I 0.803
Traes_3DL_BC7A7E056 Triticum aestivum Traes_3DL_BC7A7E056 I 0.789
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.765
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.776
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.724
VIT_07s0104g01230 Vitis vinifera VIT_07s0104g01230 I 0.796
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.755
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.714
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.786
Ca_05681 Cicer arietinum Ca_05681 I 0.776
Ca_21948 Cicer arietinum Ca_21948 I 0.714
Ca_23296 Cicer arietinum Ca_23296 I 0.704
Cla013021 Citrullus lanatus Cla013021 I 0.735
Cla019614 Citrullus lanatus Cla019614 I 0.786
Pm018352 Prunus mume Pm018352 I 0.714
Pm019941 Prunus mume Pm019941 I 0.786
Pm024149 Prunus mume Pm024149 I 0.704
Pm024588 Prunus mume Pm024588 I 0.776
30068.m002516 Ricinus communis 30068.m002516 I 0.735
30128.m008545 Ricinus communis 30128.m008545 I 0.722
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.786
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.786
cassava29828.valid.m1 Manihot esculenta cassava29828.valid.m1 I 0.714
cassava32762.m1 Manihot esculenta cassava32762.m1 I 0.714
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.786
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.724
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.724
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.724
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.714
cassava44131.valid.m1 Manihot esculenta cassava44131.valid.m1 I 0.711
cassava44132.valid.m1 Manihot esculenta cassava44132.valid.m1 I 0.711
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.724
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.724
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.724
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.724
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.724
cassava47296.m1 Manihot esculenta cassava47296.m1 I 0.711
cassava47297.m1 Manihot esculenta cassava47297.m1 I 0.711
cassava47298.m1 Manihot esculenta cassava47298.m1 I 0.711
cassava47299.m1 Manihot esculenta cassava47299.m1 I 0.711
cassava47300.m1 Manihot esculenta cassava47300.m1 I 0.711
cassava47301.m1 Manihot esculenta cassava47301.m1 I 0.711
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.724
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.745
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.803
mgf005549m Mimulus guttatus mgf005549m I 0.745
mgf006511m Mimulus guttatus mgf006511m I 0.786
mgf015308m Mimulus guttatus mgf015308m I 0.786
mgf020855m Mimulus guttatus mgf020855m I 0.776
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.755
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.750
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.704
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.776
Bostr.7867s0204 Boechera stricta Bostr.7867s0204 I 0.714
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.724
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.776
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.724
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.776
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.704
Ciclev10019174m.g Citrus clementina Ciclev10019174m.g I 0.701
Ciclev10019257m.g Citrus clementina Ciclev10019257m.g I 0.773
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.803
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.765
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.735
Eucgr.E00888 Eucalyptus grandis Eucgr.E00888 I 0.714
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.724
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.803
evm.TU.contig_31756 Carica papaya evm.TU.contig_31756 I 0.776
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.714
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.786
gene19138-v1.0-hybrid Fragaria vesca gene19138-v1.0-hybrid I 0.704
gene29771-v1.0-hybrid Fragaria vesca gene29771-v1.0-hybrid I 0.704
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.786
Gorai.001G153900 Gossypium raimondii Gorai.001G153900 I 0.704
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.745
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.724
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.722
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.714
Gorai.007G131900 Gossypium raimondii Gorai.007G131900 I 0.765
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.714
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.786
Gorai.010G157400 Gossypium raimondii Gorai.010G157400 I 0.704
Lus10013942.g Linum usitatissimum Lus10013942.g I 0.704
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.735
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.735
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.776
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.776
MDP0000123466 Malus domestica MDP0000123466 I 0.776
MDP0000139073 Malus domestica MDP0000139073 I 0.714
MDP0000194603 Malus domestica MDP0000194603 I 0.714
MDP0000258032 Malus domestica MDP0000258032 I 0.786
MDP0000310875 Malus domestica MDP0000310875 I 0.776
MDP0000929655 Malus domestica MDP0000929655 I 0.753
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.786
orange1.1g005060m.g Citrus sinensis orange1.1g005060m.g I 0.773
orange1.1g005368m.g Citrus sinensis orange1.1g005368m.g I 0.701
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.739
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.705
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.765
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.776
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.776
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.719
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.719
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.765
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.722
SapurV1A.0013s0230 Salix purpurea SapurV1A.0013s0230 I 0.704
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.735
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.722
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.755
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.722
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.776
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.776
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.765
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.714
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.776
Thhalv10024554m.g Eutrema salsugineum Thhalv10024554m.g I 0.714
PK02218.1 Cannabis sativa PK02218.1 I 0.745
PK04762.1 Cannabis sativa PK04762.1 I 0.837
PK07332.1 Cannabis sativa PK07332.1 I 0.714
PK12669.1 Cannabis sativa PK12669.1 I 0.755
PK16974.1 Cannabis sativa PK16974.1 I 0.786
chr1.LjT43L07.10.nd Lotus japonicus chr1.LjT43L07.10.nd I 0.708
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.786
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.753
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.735
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.786
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.707
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.755
PDK_20s1477241g001 Phoenix dactylifera PDK_20s1477241g001 I 0.736
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.765
PDK_20s1651081g001 Phoenix dactylifera PDK_20s1651081g001 I 0.860
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.753
GLYMA03G36710 Glycine max GLYMA03G36710 N 0.724
GLYMA19G39340 Glycine max GLYMA19G39340 N 0.745