TCM_006971 (Theobroma cacao)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 TCM_006971 T021501_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.783 0.783
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.783 0.783
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX98140 B3 5 98
EOX98140 B3 200 294
EOX98141 B3 5 97
EOX98141 B3 245 339
EOX98142 B3 5 97
EOX98142 B3 239 333
EOX98143 B3 1 46
EOX98143 B3 142 236

Links

Other B3 family TFs
Other Theobroma cacao TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZIC1 Homo sapiens ENSG00000152977 D 0.000
ZIC4 Homo sapiens ENSG00000174963 D 0.000
ENSSTOG00000027399 Ictidomys tridecemlineatus ENSSTOG00000027399 I 0.000
D917_03218 Trichinella nativa D917_03218 N 0.000
LDEC018872 Leptinotarsa decemlineata LDEC018872 N 0.000
AALB009198 Anopheles albimanus AALB009198 N 0.000
AARA001756 Anopheles arabiensis AARA001756 N 0.000
ADIR009951 Anopheles dirus ADIR009951 N 0.000
AEPI009631 Anopheles epiroticus AEPI009631 N 0.000
AMAM021135 Anopheles maculatus AMAM021135 N 0.000
ASTEI05791 Anopheles stephensi ASTEI05791 N 0.000
PPAI004317 Phlebotomus papatasi PPAI004317 N 0.000
ANCCAN_13802 Ancylostoma caninum ANCCAN_13802 N 0.000
ANCDUO_07508 Ancylostoma duodenale ANCDUO_07508 N 0.000
BTMF_0001537801 Brugia timori BTMF_0001537801 N 0.000
CLEC011939 Cimex lectularius CLEC011939 N 0.000
ECPE_0000807901 Echinostoma caproni ECPE_0000807901 N 0.000
GPLIN_000910900 Globodera pallida GPLIN_000910900 N 0.000
L889_g1190 Steinernema feltiae L889_g1190 N 0.000
nDi.2.2.2.g11925 Dirofilaria immitis nDi.2.2.2.g11925 N 0.000
OFLC_0000964601 Onchocerca flexuosa OFLC_0000964601 N 0.000
scaffold799-EXSNAP2012.6 Pristionchus exspectatus scaffold799-EXSNAP2012.6 N 0.000
SSLN_0000489501 Schistocephalus solidus SSLN_0000489501 N 0.000
TELCIR_23243 Teladorsagia circumcincta TELCIR_23243 N 0.000
TRE_0000458501 Trichobilharzia regenti TRE_0000458501 N 0.000
ENSSHAG00000004201 Sarcophilus harrisii ENSSHAG00000004201 N 0.000
ACEP13417 Atta cephalotes ACEP13417 N 0.000
ENSCPOG00000025550 Cavia porcellus ENSCPOG00000025550 N 0.000
ENSGMOG00000000145 Gadus morhua ENSGMOG00000000145 N 0.000
ENSLACG00000015786 Latimeria chalumnae ENSLACG00000015786 N 0.000
ZIC5 Loxodonta africana ENSLAFG00000009640 N 0.000
ENSMEUG00000007408 Macropus eugenii ENSMEUG00000007408 N 0.000
ENSMLUG00000027631 Myotis lucifugus ENSMLUG00000027631 N 0.000
ZIC3 Macaca mulatta ENSMMUG00000002023 N 0.000
ENSMPUG00000011382 Mustela putorius furo ENSMPUG00000011382 N 0.000
ZIC5 Otolemur garnettii ENSOGAG00000024269 N 0.000
LCUP010714 Lucilia cuprina LCUP010714 N 0.000
ENSTNIG00000017808 Tetraodon nigroviridis ENSTNIG00000017808 N 0.000
ENSXMAG00000013401 Xiphophorus maculatus ENSXMAG00000013401 N 0.000
MESCA007328 Megaselia scalaris MESCA007328 N 0.000
SMAR010285 Strigamia maritima SMAR010285 N 0.000
YQE_06158 Dendroctonus ponderosae YQE_06158 N 0.000
Alligator_sinensis_CCG018454.1 Alligator sinensis Alligator_sinensis_CCG018454.1 N 0.000
Gfo_R008500 Geospiza fortis Gfo_R008500 N 0.000
Myotis_brandtii_Zic5_10007324 Myotis brandtii Myotis_brandtii_Zic5_10007324 N 0.000
WUBG_07674 Wuchereria bancrofti WUBG_07674 N 0.000