Ciclev10028642m.g (Citrus clementina)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Ciclev10028642m.g T022967_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.716 0.716
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10028642m B3 5 98
Ciclev10028642m B3 292 376
Ciclev10028732m B3 5 98
Ciclev10028732m B3 250 345
Ciclev10029038m B3 5 48
Ciclev10029038m B3 169 264

Links

Other B3 family TFs
Other Citrus clementina TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MADS50 Oryza sativa OS03G0122600 D 0.000
Q9ATE7_PETHY Petunia x hybrida Q9ATE7_PETHY D 0.000
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.000
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.000
AGL72 Arabidopsis thaliana AT5G51860 I 0.000
AGL71 Arabidopsis thaliana AT5G51870 I 0.000
BGIOSGA005076 Oryza indica BGIOSGA005076 I 0.000
BGIOSGA007333 Oryza indica BGIOSGA007333 I 0.000
BGIOSGA007336 Oryza indica BGIOSGA007336 I 0.000
BGIOSGA018621 Oryza indica BGIOSGA018621 I 0.000
BGIOSGA022154 Oryza indica BGIOSGA022154 I 0.000
BGIOSGA029053 Oryza indica BGIOSGA029053 I 0.000
MADS56 Oryza indica BGIOSGA033356 I 0.000
Bo1g040180 Brassica oleracea Bo1g040180 I 0.000
Bo2g162920 Brassica oleracea Bo2g162920 I 0.000
Bo3g023570 Brassica oleracea Bo3g023570 I 0.000
Bo4g108190 Brassica oleracea Bo4g108190 I 0.000
Bo7g110310 Brassica oleracea Bo7g110310 I 0.000
Bo8g050720 Brassica oleracea Bo8g050720 I 0.000
Bo9g093920 Brassica oleracea Bo9g093920 I 0.000
Bra010465 Brassica rapa Bra010465 I 0.000
Bra013891 Brassica rapa Bra013891 I 0.000
Bra014552 Brassica rapa Bra014552 I 0.000
Bra028283 Brassica rapa Bra028283 I 0.000
Bra029154 Brassica rapa Bra029154 I 0.000
Bra029155 Brassica rapa Bra029155 I 0.000
Bra029281 Brassica rapa Bra029281 I 0.000
Bra029424 Brassica rapa Bra029424 I 0.000
Bra035907 Brassica rapa Bra035907 I 0.000
BRADI1G77020 Brachypodium distachyon BRADI1G77020 I 0.000
BRADI2G59120 Brachypodium distachyon BRADI2G59120 I 0.000
BRADI2G59187 Brachypodium distachyon BRADI2G59187 I 0.000
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.000
BRADI3G41297 Brachypodium distachyon BRADI3G41297 I 0.000
F775_00385 Aegilops tauschii F775_00385 I 0.000
F775_08627 Aegilops tauschii F775_08627 I 0.000
F775_10590 Aegilops tauschii F775_10590 I 0.000
F775_23758 Aegilops tauschii F775_23758 I 0.000
F775_25597 Aegilops tauschii F775_25597 I 0.000
F775_29801 Aegilops tauschii F775_29801 I 0.000
F775_43625 Aegilops tauschii F775_43625 I 0.000
GLYMA10G38541 Glycine max GLYMA10G38541 I 0.000
GLYMA20G29300 Glycine max GLYMA20G29300 I 0.000
GRMZM2G010669 Zea mays GRMZM2G010669 I 0.000
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.000
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.000
GRMZM2G098986 Zea mays GRMZM2G098986 I 0.000
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.000
GRMZM2G320549 Zea mays GRMZM2G320549 I 0.000
GSMUA_Achr11G15560_001 Musa acuminata GSMUA_Achr11G15560_001 I 0.000
GSMUA_Achr1G24070_001 Musa acuminata GSMUA_Achr1G24070_001 I 0.000
GSMUA_Achr6G14760_001 Musa acuminata GSMUA_Achr6G14760_001 I 0.000
GSMUA_Achr8G09250_001 Musa acuminata GSMUA_Achr8G09250_001 I 0.000
GSMUA_AchrUn_randomG20290_001 Musa acuminata GSMUA_AchrUn_randomG20290_001 I 0.000
LPERR01G36730 Leersia perrieri LPERR01G36730 I 0.000
LPERR02G00370 Leersia perrieri LPERR02G00370 I 0.000
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.000
LPERR06G00470 Leersia perrieri LPERR06G00470 I 0.000
LPERR08G12860 Leersia perrieri LPERR08G12860 I 0.000
LPERR08G18330 Leersia perrieri LPERR08G18330 I 0.000
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.000
MLOC_12290 Hordeum vulgare MLOC_12290 I 0.000
MLOC_76418 Hordeum vulgare MLOC_76418 I 0.000
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.000
OB03G11760 Oryza brachyantha OB03G11760 I 0.000
OB06G10570 Oryza brachyantha OB06G10570 I 0.000
OB08G28340 Oryza brachyantha OB08G28340 I 0.000
OB10G24040 Oryza brachyantha OB10G24040 I 0.000
OBART01G42170 Oryza barthii OBART01G42170 I 0.000
OBART02G00360 Oryza barthii OBART02G00360 I 0.000
OBART03G01800 Oryza barthii OBART03G01800 I 0.000
OBART06G00520 Oryza barthii OBART06G00520 I 0.000
OBART08G21560 Oryza barthii OBART08G21560 I 0.000
OBART10G16960 Oryza barthii OBART10G16960 I 0.000
OGLUM01G46440 Oryza glumaepatula OGLUM01G46440 I 0.000
OGLUM02G00350 Oryza glumaepatula OGLUM02G00350 I 0.000
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.000
OGLUM06G00450 Oryza glumaepatula OGLUM06G00450 I 0.000
OGLUM08G22840 Oryza glumaepatula OGLUM08G22840 I 0.000
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.000
OLONG_001786 Oryza longistaminata OLONG_001786 I 0.000
OLONG_004735 Oryza longistaminata OLONG_004735 I 0.000
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.000
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.000
OMERI01G39210 Oryza meridionalis OMERI01G39210 I 0.000
OMERI02G09250 Oryza meridionalis OMERI02G09250 I 0.000
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.000
OMERI06G00470 Oryza meridionalis OMERI06G00470 I 0.000
OMERI06G13650 Oryza meridionalis OMERI06G13650 I 0.000
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.000
ONIVA01G48250 Oryza nivara ONIVA01G48250 I 0.000
ONIVA02G00370 Oryza nivara ONIVA02G00370 I 0.000
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.000
ONIVA06G00530 Oryza nivara ONIVA06G00530 I 0.000
ONIVA08G24570 Oryza nivara ONIVA08G24570 I 0.000
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.000
OPUNC01G41110 Oryza punctata OPUNC01G41110 I 0.000
OPUNC02G00040 Oryza punctata OPUNC02G00040 I 0.000
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.000
OPUNC06G00450 Oryza punctata OPUNC06G00450 I 0.000
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.000
OPUNC08G18260 Oryza punctata OPUNC08G18260 I 0.000
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.000
OPUNC10G15300 Oryza punctata OPUNC10G15300 I 0.000
ORGLA01G0361900 Oryza glaberrima ORGLA01G0361900 I 0.000
ORGLA02G0003200 Oryza glaberrima ORGLA02G0003200 I 0.000
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.000
ORGLA06G0005200 Oryza glaberrima ORGLA06G0005200 I 0.000
ORGLA08G0229900 Oryza glaberrima ORGLA08G0229900 I 0.000
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.000
ORUFI02G00390 Oryza rufipogon ORUFI02G00390 I 0.000
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.000
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I 0.000
ORUFI06G00550 Oryza rufipogon ORUFI06G00550 I 0.000
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.000
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.000
OS02G0104100 Oryza sativa OS02G0104100 I 0.000
OS05G0203800 Oryza sativa OS05G0203800 I 0.000
OS06G0108500 Oryza sativa OS06G0108500 I 0.000
OS08G0531900 Oryza sativa OS08G0531900 I 0.000
MADS56 Oryza sativa OS10G0536100 I 0.000
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.000
PGSC0003DMG400025279 Solanum tuberosum PGSC0003DMG400025279 I 0.000
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.000
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I 0.000
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.000
Sb01g049020 Sorghum bicolor Sb01g049020 I 0.000
Sb03g006210 Sorghum bicolor Sb03g006210 I 0.000
Sb04g000500 Sorghum bicolor Sb04g000500 I 0.000
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.000
scaffold_801621.1 Arabidopsis lyrata scaffold_801621.1 I 0.000
Si004582m.g Setaria italica Si004582m.g I 0.000
Si005133m.g Setaria italica Si005133m.g I 0.000
Si008672m.g Setaria italica Si008672m.g I 0.000
Si014540m.g Setaria italica Si014540m.g I 0.000
Si015525m.g Setaria italica Si015525m.g I 0.000
Si019985m.g Setaria italica Si019985m.g I 0.000
Si038257m.g Setaria italica Si038257m.g I 0.000
Solyc06g035570.1 Solanum lycopersicum Solyc06g035570.1 I 0.000
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.000
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.000
Traes_1AL_6F5982F88 Triticum aestivum Traes_1AL_6F5982F88 I 0.000
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.000
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I 0.000
TRAES3BF009000010CFD_g Triticum aestivum TRAES3BF009000010CFD_g I 0.000
TRAES3BF009000040CFD_g Triticum aestivum TRAES3BF009000040CFD_g I 0.000
Traes_4BL_B8FFB0854 Triticum aestivum Traes_4BL_B8FFB0854 I 0.000
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.000
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.000
Traes_6AS_D6ABA1D79 Triticum aestivum Traes_6AS_D6ABA1D79 I 0.000
Traes_6DS_2BAD7A60A Triticum aestivum Traes_6DS_2BAD7A60A I 0.000
Traes_7AS_F568FCBF1 Triticum aestivum Traes_7AS_F568FCBF1 I 0.000
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.000
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.000
Traes_7DS_4DF7EB08F Triticum aestivum Traes_7DS_4DF7EB08F I 0.000
TRIUR3_18962 Triticum urartu TRIUR3_18962 I 0.000
TRIUR3_19056 Triticum urartu TRIUR3_19056 I 0.000
TRIUR3_20985 Triticum urartu TRIUR3_20985 I 0.000
TRIUR3_21732 Triticum urartu TRIUR3_21732 I 0.000
TRIUR3_22964 Triticum urartu TRIUR3_22964 I 0.000
TRIUR3_28473 Triticum urartu TRIUR3_28473 I 0.000
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.000
TRIUR3_30872 Triticum urartu TRIUR3_30872 I 0.000
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.000
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.000
Ca_16423 Cicer arietinum Ca_16423 I 0.000
Pm018089 Prunus mume Pm018089 I 0.000
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.000
mgf005831m Mimulus guttatus mgf005831m I 0.000
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.000
Bostr.15774s0334 Boechera stricta Bostr.15774s0334 I 0.000
Cagra.0277s0030 Capsella grandiflora Cagra.0277s0030 I 0.000
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.000
Carubv10027093m.g Capsella rubella Carubv10027093m.g I 0.000
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.000
gene13354-v1.0-hybrid Fragaria vesca gene13354-v1.0-hybrid I 0.000
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.000
Pavir.Aa03568 Panicum virgatum Pavir.Aa03568 I 0.000
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I 0.000
Pavir.Eb00729 Panicum virgatum Pavir.Eb00729 I 0.000
Pavir.Fa00163 Panicum virgatum Pavir.Fa00163 I 0.000
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I 0.000
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.000
Pavir.J02739 Panicum virgatum Pavir.J02739 I 0.000
Pavir.J08622 Panicum virgatum Pavir.J08622 I 0.000
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.000
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.000
Thhalv10014716m.g Eutrema salsugineum Thhalv10014716m.g I 0.000
Thhalv10015303m.g Eutrema salsugineum Thhalv10015303m.g I 0.000
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.000