CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene01855-v1.0-hybrid
(
Fragaria vesca
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
gene01855-v1.0-hybrid
T023162_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M01646_2.00
Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN
PBM
Weirauch et al.(2014)
pTH8592
0.713
0.713
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna01855.1-v1.0-hybrid
B3
115
220
FDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELGKDRLYIDWRRRP
Links
Other
B3
family TFs
Other
Fragaria vesca
TFs
304 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw.675.3.1
Branchiostoma floridae
e_gw.675.3.1
N