Gorai.013G039800 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.013G039800 T023422_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REM19
M06702_2.00 		Arabidopsis thaliana
TKWTTTTTTTTTKKY
RMMAAAAAAAAAWMA		 Dap-seq
OMalley et al.(2016)
REM19_col_a 		0.729 0.729
REM19
M06703_2.00 		Arabidopsis thaliana
NWBTTTTTTTTTTTTKKHHWH
DWDDMMAAAAAAAAAAAAVWN		 Dap-seq
OMalley et al.(2016)
REM19_colamp_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G039800.1 B3 131 226
Gorai.013G039800.2 B3 131 226
Gorai.013G039800.3 B3 103 198
Gorai.013G039800.4 B3 89 184
Gorai.013G039800.5 B3 131 226
Gorai.013G039800.6 B3 89 184

Links

Other B3 family TFs
Other Gossypium raimondii TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZIC1 Homo sapiens ENSG00000152977 D 0.000
ZIC4 Homo sapiens ENSG00000174963 D 0.000
ENSSTOG00000027399 Ictidomys tridecemlineatus ENSSTOG00000027399 I 0.000
BTMF_0001537801 Brugia timori BTMF_0001537801 N 0.000
LDEC018872 Leptinotarsa decemlineata LDEC018872 N 0.000
AALB009198 Anopheles albimanus AALB009198 N 0.000
AARA001756 Anopheles arabiensis AARA001756 N 0.000
ADIR009951 Anopheles dirus ADIR009951 N 0.000
AEPI009631 Anopheles epiroticus AEPI009631 N 0.000
AMAM021135 Anopheles maculatus AMAM021135 N 0.000
ASTEI05791 Anopheles stephensi ASTEI05791 N 0.000
PPAI004317 Phlebotomus papatasi PPAI004317 N 0.000
ANCCAN_13802 Ancylostoma caninum ANCCAN_13802 N 0.000
ANCDUO_07508 Ancylostoma duodenale ANCDUO_07508 N 0.000
Ocbimv22019249m.g Octopus bimaculoides Ocbimv22019249m.g N 0.000
D917_03218 Trichinella nativa D917_03218 N 0.000
ECPE_0000807901 Echinostoma caproni ECPE_0000807901 N 0.000
L889_g1190 Steinernema feltiae L889_g1190 N 0.000
nDi.2.2.2.g11925 Dirofilaria immitis nDi.2.2.2.g11925 N 0.000
OFLC_0000964601 Onchocerca flexuosa OFLC_0000964601 N 0.000
scaffold799-EXSNAP2012.6 Pristionchus exspectatus scaffold799-EXSNAP2012.6 N 0.000
TELCIR_23243 Teladorsagia circumcincta TELCIR_23243 N 0.000
TRE_0000458501 Trichobilharzia regenti TRE_0000458501 N 0.000
ENSTNIG00000017808 Tetraodon nigroviridis ENSTNIG00000017808 N 0.000
ENSCPOG00000025550 Cavia porcellus ENSCPOG00000025550 N 0.000
ENSLACG00000015786 Latimeria chalumnae ENSLACG00000015786 N 0.000
ZIC5 Loxodonta africana ENSLAFG00000009640 N 0.000
ENSMEUG00000007408 Macropus eugenii ENSMEUG00000007408 N 0.000
ENSMLUG00000027631 Myotis lucifugus ENSMLUG00000027631 N 0.000
ZIC3 Macaca mulatta ENSMMUG00000002023 N 0.000
ENSMPUG00000011382 Mustela putorius furo ENSMPUG00000011382 N 0.000
ZIC5 Otolemur garnettii ENSOGAG00000024269 N 0.000
ENSSHAG00000004201 Sarcophilus harrisii ENSSHAG00000004201 N 0.000
LCUP010714 Lucilia cuprina LCUP010714 N 0.000
ENSXMAG00000013401 Xiphophorus maculatus ENSXMAG00000013401 N 0.000
MESCA007328 Megaselia scalaris MESCA007328 N 0.000
SMAR010285 Strigamia maritima SMAR010285 N 0.000
YQE_06158 Dendroctonus ponderosae YQE_06158 N 0.000
Alligator_sinensis_CCG018454.1 Alligator sinensis Alligator_sinensis_CCG018454.1 N 0.000
Gfo_R008500 Geospiza fortis Gfo_R008500 N 0.000
Myotis_brandtii_Zic5_10007324 Myotis brandtii Myotis_brandtii_Zic5_10007324 N 0.000
WUBG_07674 Wuchereria bancrofti WUBG_07674 N 0.000
CLEC011939 Cimex lectularius CLEC011939 N 0.000