Bo3g149640 (Brassica oleracea)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 Bo3g149640 T024530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.872 0.872
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.872 0.872
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g149640.1 BBR 1 47

Links

Other BBR family TFs
Other Brassica oleracea TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PMAA_001790 Talaromyces marneffei PMAA_001790 N
PMAA_001790 Penicillium marneffei PMAA_001790 N
Z519_02061 Cladophialophora bantiana Z519_02061 N
Z518_04980 Rhinocladiella mackenziei Z518_04980 N
TSTA_099190 Talaromyces stipitatus TSTA_099190 N
PV10_01954 Exophiala mesophila PV10_01954 N
PV07_06253 Cladophialophora immunda PV07_06253 N
PV06_05578 Exophiala oligosperma PV06_05578 N
PV05_09876 Exophiala xenobiotica PV05_09876 N
PV04_00541 Capronia semiimmersa PV04_00541 N
A1O3_08818 Capronia epimyces A1O3_08818 N
M438DRAFT_363806 Aureobasidium pullulans M438DRAFT_363806 N
M437DRAFT_60050 Aureobasidium melanogenum M437DRAFT_60050 N
H072_136 Dactylellina haptotyla H072_136 N
G647_01486 Cladophialophora carrionii G647_01486 N
EURHEDRAFT_417585 Aspergillus ruber EURHEDRAFT_417585 N
CADANGAG00007889 Aspergillus niger CADANGAG00007889 N
ACLA_074230 Aspergillus clavatus CADACLAG00006381 N
AUEXF2481DRAFT_701448 Aureobasidium subglaciale AUEXF2481DRAFT_701448 N
AUEXF2481DRAFT_234640 Aureobasidium subglaciale AUEXF2481DRAFT_234640 N