Gorai.004G107300 (Gossypium raimondii)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Gorai.004G107300 T028330_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G107300.1 BED ZF 37 88
Gorai.004G107300.2 BED ZF 37 88

Links

Other BED ZF family TFs
Other Gossypium raimondii TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.818
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.864
gene31106-v1.0-hybrid Fragaria vesca gene31106-v1.0-hybrid N 0.744
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.864
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.818
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.727
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.886
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.795
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.909
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.750
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.818
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.750
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.727
Bostr.0556s0643 Boechera stricta Bostr.0556s0643 N 0.727
mgf025287m Mimulus guttatus mgf025287m N 0.909
mgf010516m Mimulus guttatus mgf010516m N 0.705
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.818
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.795
Pm013703 Prunus mume Pm013703 N 0.750
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.886
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.773
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.727
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.727
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.705
PK27100.1 Cannabis sativa PK27100.1 N 0.909
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.705
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.795
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.795
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.795
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.773
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.864
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.773
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.773
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.727
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.773
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.727
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.773
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.773
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.750
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.795
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.909
MDP0000394762 Malus domestica MDP0000394762 N 0.864
MDP0000197332 Malus domestica MDP0000197332 N 0.818
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.750
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.750
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.909
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.909
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.773
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.795
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.750
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.818
OS05G0583200 Oryza sativa OS05G0583200 N 0.705
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.705
OB08G27850 Oryza brachyantha OB08G27850 N 0.795
OB08G27840 Oryza brachyantha OB08G27840 N 0.773
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.750
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.773
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.727
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.773
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.795
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.750
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N 0.705
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.886
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.886
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.886
GLYMA07G03280 Glycine max GLYMA07G03280 N 0.705
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.818
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.773
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.727
Bo4g137780 Brassica oleracea Bo4g137780 N 0.795
Bo4g107870 Brassica oleracea Bo4g107870 N 0.727
Si034159m.g Setaria italica Si034159m.g N 0.773
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.773
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.750
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.750
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.773
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.773
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.750
TCM_038144 Theobroma cacao TCM_038144 N 0.955
TCM_027266 Theobroma cacao TCM_027266 N 0.750
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.818
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.795
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.750
HAT Arabidopsis thaliana AT3G42170 N 0.727
Si000761m.g Setaria italica Si000761m.g N 0.727
Si000431m.g Setaria italica Si000431m.g N 0.773
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.750
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.773
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.750
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.932
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.864
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.795
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.837
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.841
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.795