Pavir.J18772 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J18772 T028590_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J18772.1.p BED ZF 27 76

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CLOCK Homo sapiens ENSG00000134852 D
Clock Mus musculus ENSMUSG00000029238 D
CLOCK Pteropus vampyrus ENSPVAG00000008960 I
clocka Takifugu rubripes ENSTRUG00000001837 I
clockb Tetraodon nigroviridis ENSTNIG00000017652 I
clocka Tetraodon nigroviridis ENSTNIG00000004102 I
ENSTGUG00000007495 Taeniopygia guttata ENSTGUG00000007495 I
CLOCK Tupaia belangeri ENSTBEG00000002540 I
ENSSTOG00000016179 Ictidomys tridecemlineatus ENSSTOG00000016179 I
CLOCK Sus scrofa ENSSSCG00000008909 I
ENSSHAG00000005555 Sarcophilus harrisii ENSSHAG00000005555 I
Clock Rattus norvegicus ENSRNOG00000002175 I
clockb Takifugu rubripes ENSTRUG00000015488 I
CLOCK Pan troglodytes ENSPTRG00000016072 I
ENSPSIG00000011404 Pelodiscus sinensis ENSPSIG00000011404 I
ENSPPYG00000014762 Pongo abelii ENSPPYG00000014762 I
ENSPFOG00000017215 Poecilia formosa ENSPFOG00000017215 I
ENSPFOG00000015083 Poecilia formosa ENSPFOG00000015083 I
CLOCK Procavia capensis ENSPCAG00000001407 I
ENSPANG00000006882 Papio anubis ENSPANG00000006882 I
clocka Oryzias latipes ENSORLG00000004495 I
ENSMMUP00000002568 Macaca fascicularis ENSMMUP00000002568 I
clock.L Xenopus laevis XB-GENE-6254406 I
clock Xenopus tropicalis XB-GENE-495448 I
SNAPOd2T00001991001 Oikopleura dioica SNAPOd2T00001991001 I
Tal_R002573 Tyto alba Tal_R002573 I
Pvit_07605 Pogona vitticeps Pvit_07605 I
Ogr11799 Ophisaurus gracilis Ogr11799 I
Myotis_brandtii_Clock_10026771 Myotis brandtii Myotis_brandtii_Clock_10026771 I
Gfo_R010434 Geospiza fortis Gfo_R010434 I
ENSP00000370723-D1 Bos grunniens ENSP00000370723-D1 I
ENSONIG00000008797 Oreochromis niloticus ENSONIG00000008797 I
Brh_R001802 Buceros rhinoceros Brh_R001802 I
Afo_R013414 Aptenodytes forsteri Afo_R013414 I
Aan_R004160 Calypte anna Aan_R004160 I
ENSXMAG00000017672 Xiphophorus maculatus ENSXMAG00000017672 I
ENSXMAG00000016928 Xiphophorus maculatus ENSXMAG00000016928 I
CLOCK Vicugna pacos ENSVPAG00000006438 I
CLOCK Tursiops truncatus ENSTTRG00000000960 I
ENSTSYG00000003546 Tarsius syrichta ENSTSYG00000003546 I
ENSCSAG00000005019 Chlorocebus sabaeus ENSCSAG00000005019 I
CLOCK Gallus gallus ENSGALG00000013793 I
clocka Gasterosteus aculeatus ENSGACG00000015939 I
CLOCK Felis catus ENSFCAG00000001064 I
ENSFALG00000003646 Ficedula albicollis ENSFALG00000003646 I
CLOCK Echinops telfairi ENSETEG00000015604 I
CLOCK Equus caballus ENSECAG00000006331 I
CLOCK Dasypus novemcinctus ENSDNOG00000018101 I
clocka Danio rerio ENSDARG00000011703 I
clockb Danio rerio ENSDARG00000003631 I
CLOCK Gorilla gorilla ENSGGOG00000005753 I
CLOCK Cavia porcellus ENSCPOG00000011807 I
CLOCK Callithrix jacchus ENSCJAG00000018261 I
CLOCK Canis familiaris ENSCAFG00000002140 I
CLOCK Bos taurus ENSBTAG00000044044 I
ENSAPLG00000007176 Anas platyrhynchos ENSAPLG00000007176 I
ENSAMXG00000021792 Astyanax mexicanus ENSAMXG00000021792 I
ENSAMXG00000005565 Astyanax mexicanus ENSAMXG00000005565 I
ENSAMEG00000018420 Ailuropoda melanoleuca ENSAMEG00000018420 I
CLOCK Monodelphis domestica ENSMODG00000020678 I
CLOCK Anolis carolinensis ENSACAG00000009335 I
ENSONIG00000002943 Oreochromis niloticus ENSONIG00000002943 I
CLOCK Otolemur garnettii ENSOGAG00000012464 I
CLOCK Oryctolagus cuniculus ENSOCUG00000022350 I
ENSOARG00000001602 Ovis aries ENSOARG00000001602 I
CLOCK Ornithorhynchus anatinus ENSOANG00000003801 I
ENSNLEG00000008499 Nomascus leucogenys ENSNLEG00000008499 I
ENSMPUG00000005091 Mustela putorius furo ENSMPUG00000005091 I
CLOCK Ochotona princeps ENSOPRG00000005292 I
CLOCK Macaca mulatta ENSMMUG00000001919 I
CLOCK Myotis lucifugus ENSMLUG00000010007 I
CLOCK Meleagris gallopavo ENSMGAG00000011742 I
ENSMEUG00000005481 Macropus eugenii ENSMEUG00000005481 I
ENSLOCG00000014043 Lepisosteus oculatus ENSLOCG00000014043 I
CLOCK Loxodonta africana ENSLAFG00000009558 I
ENSLACG00000013436 Latimeria chalumnae ENSLACG00000013436 I
ENSGMOG00000004825 Gadus morhua ENSGMOG00000004825 I