CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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genemark-nMf.1.1.scaf12808-processed-gene-0.1
(
Meloidogyne floridensis
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
genemark-nMf.1.1.scaf12808-processed-gene-0.1
T029335_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
genemark-nMf.1.1.scaf12808-processed-gene-0.1-mRNA-1
BED ZF
7
45
RHYGIILLINIGGNSVICRHCSEHIKRGSALSHVRNSHN
genemark-nMf.1.1.scaf12808-processed-gene-0.1-mRNA-1
BED ZF
53
95
QAVLKHFTKIDNGRDQGKLRCHHCRRKFDDHIHALTMHCLSHG
Links
Other
BED ZF
family TFs
Other
Meloidogyne floridensis
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CpipJ_CPIJ000181
Culex pipiens
CpipJ_CPIJ000181
N
CPIJ000181
Culex quinquefasciatus
CPIJ000181
N
AFAF013114
Anopheles farauti
AFAF013114
N
AMEC000262
Anopheles melas
AMEC000262
N