arnt2 (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000103697 T033747_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arnt2
M01720_2.00 		Mus musculus
NCAYRTGMNN
NNKCAYRTGN		 PBM
Weirauch et al.(2014)
pTH5159 		0.914 0.981
ARNT2
M04170_2.00 		Homo sapiens
RDCACGTGMN
NKCACGTGHY		 SELEX
Yin et al.(2017)
ARNT2_eDBD_HT-SELEX 		0.914 0.981
Arnt2
M09888_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ARNT2_01 		0.914 1.000
Arnt
M01719_2.00 		Mus musculus
NNKCACGTGMNN
NNKCACGTGMNN		 PBM
Weirauch et al.(2014)
pTH5111 		0.862 0.944
ARNT
M08732_2.00 		Homo sapiens
NKRCGTGMN
NKCACGYMN		 Misc
Kulakovskiy et al.(2013)
ARNT_HUMAN.H11MO.0.B 		0.862 0.963
ARNT
M09459_2.00 		Homo sapiens
KCACGTNN
NNACGTGM		 Misc
Heinz et al.(2010)
T47D-HIF1b_GSE59937 		0.862 0.963
ARNT
M09863_2.00 		Homo sapiens
NVNNNCACGTGNHHHN
NDDDNCACGTGNNNBN		 Transfac
Matys et al.(2006)
V$ARNT_01 		0.862 0.963
ARNT
M09864_2.00 		Homo sapiens
VVNNNRKCACGTGMYNNNBB
VVNNNRKCACGTGMYNNNBB		 Transfac
Matys et al.(2006)
V$ARNT_02 		0.862 0.963
ARNT
M09865_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ARNT_Q6_01 		0.862 0.963
ARNT
M09866_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ARNT_Q6 		0.862 0.963
tgo
M06005_2.00 		Drosophila melanogaster
RDDTCGTGAYY
RRTCACGAHHY		 B1H
Zhu et al.(2011)
dys_tgo_SANGER_5_FBgn0015014 		0.862 0.907
tgo
M06006_2.00 		Drosophila melanogaster
SDTTGCGTGAC
GTCACGCAAHS		 B1H
Zhu et al.(2011)
ss_tgo_SANGER_10_FBgn0015014 		0.862 0.907
tgo
M06007_2.00 		Drosophila melanogaster
KCACGTGAC
GTCACGTGM		 B1H
Zhu et al.(2011)
tgo_cyc_SANGER_5_FBgn0015014 		0.862 0.889
tgo
M06008_2.00 		Drosophila melanogaster
RTACGTGAC
GTCACGTAY		 B1H
Zhu et al.(2011)
tgo_sima_SANGER_5_FBgn0015014 		0.862 0.889
tgo
M06009_2.00 		Drosophila melanogaster
VWACGTGACY
RGTCACGTWB		 B1H
Zhu et al.(2011)
tgo_sim_SANGER_5_FBgn0015014 		0.862 0.889
tgo
M06010_2.00 		Drosophila melanogaster
TGCGTGAC
GTCACGCA		 B1H
Zhu et al.(2011)
tgo_ss_SANGER_5_FBgn0015014 		0.862 0.889
tgo
M06011_2.00 		Drosophila melanogaster
RCACGTGAC
GTCACGTGY		 B1H
Zhu et al.(2011)
tgo_tai_SANGER_5_FBgn0015014 		0.862 0.889
tgo
M06012_2.00 		Drosophila melanogaster
VTACGTGACB
VGTCACGTAB		 B1H
Zhu et al.(2011)
tgo_trh_SANGER_5_FBgn0015014 		0.862 0.889
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000131184 bHLH 79 132
ENSDARP00000131846 bHLH 64 117
ENSDARP00000136894 bHLH 79 132

Links

Other bHLH family TFs
Other Danio rerio TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP23 Arabidopsis thaliana AT1G35560 D
TCP22 Arabidopsis thaliana AT1G72010 D
TCP21 Arabidopsis thaliana AT5G08330 D
TCP7 Arabidopsis thaliana AT5G23280 D
AMTR_s00017p00035550 Amborella trichopoda AMTR_s00017p00035550 I
AMTR_s00029p00040760 Amborella trichopoda AMTR_s00029p00040760 I
BGIOSGA005319 Oryza indica BGIOSGA005319 I
Bo2g009040 Brassica oleracea Bo2g009040 I
Bo2g075210 Brassica oleracea Bo2g075210 I
Bo2g160970 Brassica oleracea Bo2g160970 I
Bo3g004850 Brassica oleracea Bo3g004850 I
Bo6g114530 Brassica oleracea Bo6g114530 I
Bo7g097790 Brassica oleracea Bo7g097790 I
Bo9g014260 Brassica oleracea Bo9g014260 I
Bo9g174490 Brassica oleracea Bo9g174490 I
Bra005984 Brassica rapa Bra005984 I
Bra008001 Brassica rapa Bra008001 I
Bra009338 Brassica rapa Bra009338 I
Bra009667 Brassica rapa Bra009667 I
Bra016090 Brassica rapa Bra016090 I
Bra026506 Brassica rapa Bra026506 I
Bra028662 Brassica rapa Bra028662 I
BRADI4G41430 Brachypodium distachyon BRADI4G41430 I
fgenesh2_kg.1__3639__AT1G35560.1 Arabidopsis lyrata fgenesh2_kg.1__3639__AT1G35560.1 I
fgenesh2_kg.6__2323__AT5G23280.1 Arabidopsis lyrata fgenesh2_kg.6__2323__AT5G23280.1 I
GLYMA08G41070 Glycine max GLYMA08G41070 I
GLYMA09G42120 Glycine max GLYMA09G42120 I
GLYMA09G42140 Glycine max GLYMA09G42140 I
GLYMA10G43190 Glycine max GLYMA10G43190 I
GLYMA12G28970 Glycine max GLYMA12G28970 I
GLYMA20G23700 Glycine max GLYMA20G23700 I
GRMZM2G089638 Zea mays GRMZM2G089638 I
GRMZM2G093895 Zea mays GRMZM2G093895 I
GRMZM2G445944 Zea mays GRMZM2G445944 I
GSMUA_Achr11G01790_001 Musa acuminata GSMUA_Achr11G01790_001 I
GSMUA_Achr6G02720_001 Musa acuminata GSMUA_Achr6G02720_001 I
GSMUA_Achr7G17990_001 Musa acuminata GSMUA_Achr7G17990_001 I
LPERR02G31580 Leersia perrieri LPERR02G31580 I
LPERR12G04110 Leersia perrieri LPERR12G04110 I
MLOC_23537 Hordeum vulgare MLOC_23537 I
MTR_1g038650 Medicago truncatula MTR_1g038650 I
MTR_1g114380 Medicago truncatula MTR_1g114380 I
OGLUM01G49640 Oryza glumaepatula OGLUM01G49640 I
OGLUM12G05210 Oryza glumaepatula OGLUM12G05210 I
OMERI02G24760 Oryza meridionalis OMERI02G24760 I
OMERI02G35970 Oryza meridionalis OMERI02G35970 I
OMERI12G02590 Oryza meridionalis OMERI12G02590 I
ONIVA02G40990 Oryza nivara ONIVA02G40990 I
ONIVA12G04090 Oryza nivara ONIVA12G04090 I
OPUNC02G35370 Oryza punctata OPUNC02G35370 I
OPUNC04G16970 Oryza punctata OPUNC04G16970 I
ORGLA02G0333700 Oryza glaberrima ORGLA02G0333700 I
ORUFI02G39810 Oryza rufipogon ORUFI02G39810 I
OS02G0828566 Oryza sativa OS02G0828566 I
OS03G0422702 Oryza sativa OS03G0422702 I
OS12G0173300 Oryza sativa OS12G0173300 I
PGSC0003DMG400016363 Solanum tuberosum PGSC0003DMG400016363 I
POPTR_0005s09250 Populus trichocarpa POPTR_0005s09250 I
POPTR_0007s07480 Populus trichocarpa POPTR_0007s07480 I
POPTR_0019s11120 Populus trichocarpa POPTR_0019s11120 I
Sb04g026970 Sorghum bicolor Sb04g026970 I
Sb04g038140 Sorghum bicolor Sb04g038140 I
Sb06g023130 Sorghum bicolor Sb06g023130 I
Sb08g004600 Sorghum bicolor Sb08g004600 I
scaffold_202121.1 Arabidopsis lyrata scaffold_202121.1 I
scaffold_600839.1 Arabidopsis lyrata scaffold_600839.1 I
Solyc01g008230.2 Solanum lycopersicum Solyc01g008230.2 I
Solyc04g009180.1 Solanum lycopersicum Solyc04g009180.1 I
Solyc06g065190.1 Solanum lycopersicum Solyc06g065190.1 I
Solyc11g020670.1 Solanum lycopersicum Solyc11g020670.1 I
TCM_006249 Theobroma cacao TCM_006249 I
TCM_007700 Theobroma cacao TCM_007700 I
TCM_013943 Theobroma cacao TCM_013943 I
TCM_036394 Theobroma cacao TCM_036394 I
Traes_4BS_6A0B5C129 Triticum aestivum Traes_4BS_6A0B5C129 I
Traes_4DS_9C2FD9F381 Triticum aestivum Traes_4DS_9C2FD9F381 I
Traes_6AL_6B7CBC837 Triticum aestivum Traes_6AL_6B7CBC837 I
VIT_10s0042g00170 Vitis vinifera VIT_10s0042g00170 I
Ca_00040 Cicer arietinum Ca_00040 I
Ca_20021 Cicer arietinum Ca_20021 I
Ca_20022 Cicer arietinum Ca_20022 I
Cla009248 Citrullus lanatus Cla009248 I
Cla020356 Citrullus lanatus Cla020356 I
29728.m000800 Ricinus communis 29728.m000800 I
30014.m000446 Ricinus communis 30014.m000446 I
cassava10122.m1 Manihot esculenta cassava10122.m1 I
cassava16176.m1 Manihot esculenta cassava16176.m1 I
cassava35461.valid.m1 Manihot esculenta cassava35461.valid.m1 I
cassava35647.valid.m1 Manihot esculenta cassava35647.valid.m1 I
Cucsa.014000 Cucumis sativus Cucsa.014000 I
Cucsa.166230 Cucumis sativus Cucsa.166230 I
mgf022334m Mimulus guttatus mgf022334m I
mgf024922m Mimulus guttatus mgf024922m I
Aquca_091_00069 Aquilegia coerulea Aquca_091_00069 I
Bostr.10199s0106 Boechera stricta Bostr.10199s0106 I
Bostr.10273s0152 Boechera stricta Bostr.10273s0152 I
Bostr.13129s0127 Boechera stricta Bostr.13129s0127 I
Bostr.1774s0019 Boechera stricta Bostr.1774s0019 I
Cagra.1365s0040 Capsella grandiflora Cagra.1365s0040 I
Cagra.4006s0026 Capsella grandiflora Cagra.4006s0026 I
Cagra.4348s0009 Capsella grandiflora Cagra.4348s0009 I
Carubv10001541m.g Capsella rubella Carubv10001541m.g I
Carubv10001850m.g Capsella rubella Carubv10001850m.g I
Carubv10022457m.g Capsella rubella Carubv10022457m.g I
Ciclev10000702m.g Citrus clementina Ciclev10000702m.g I
Ciclev10001849m.g Citrus clementina Ciclev10001849m.g I
Ciclev10032441m.g Citrus clementina Ciclev10032441m.g I
Eucgr.F02587 Eucalyptus grandis Eucgr.F02587 I
evm.TU.supercontig_60.75 Carica papaya evm.TU.supercontig_60.75 I
gene12294-v1.0-hybrid Fragaria vesca gene12294-v1.0-hybrid I
Gorai.002G215000 Gossypium raimondii Gorai.002G215000 I
Gorai.005G211900 Gossypium raimondii Gorai.005G211900 I
Gorai.009G289000 Gossypium raimondii Gorai.009G289000 I
Gorai.012G166500 Gossypium raimondii Gorai.012G166500 I
Gorai.013G068600 Gossypium raimondii Gorai.013G068600 I
Lus10010177.g Linum usitatissimum Lus10010177.g I
MDP0000238683 Malus domestica MDP0000238683 I
MDP0000851695 Malus domestica MDP0000851695 I
orange1.1g008187m.g Citrus sinensis orange1.1g008187m.g I
orange1.1g024547m.g Citrus sinensis orange1.1g024547m.g I
Pavir.J00025 Panicum virgatum Pavir.J00025 I
SapurV1A.0103s0310 Salix purpurea SapurV1A.0103s0310 I
SapurV1A.0277s0170 Salix purpurea SapurV1A.0277s0170 I
SapurV1A.0333s0240 Salix purpurea SapurV1A.0333s0240 I
SapurV1A.2902s0010 Salix purpurea SapurV1A.2902s0010 I
Thhalv10001860m.g Eutrema salsugineum Thhalv10001860m.g I
Thhalv10004796m.g Eutrema salsugineum Thhalv10004796m.g I
Thhalv10014503m.g Eutrema salsugineum Thhalv10014503m.g I
Thhalv10018667m.g Eutrema salsugineum Thhalv10018667m.g I
PK13567.1 Cannabis sativa PK13567.1 I
chr5.CM1439.250.nd Lotus japonicus chr5.CM1439.250.nd I